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Commit Graph

35 Commits

Author SHA1 Message Date
J. Fernando Sánchez
3776c4e5c5 Refactor
* Removed references to `set_state`
* Split some functionality from `agents` into separate files (`fsm` and
`network_agents`)
* Rename `neighboring_agents` to `neighbors`
* Delete some spurious functions
2022-10-17 21:49:31 +02:00
J. Fernando Sánchez
880a9f2a1c black formatting 2022-10-17 20:23:57 +02:00
J. Fernando Sánchez
227fdf050e Fix conditionals 2022-10-17 19:29:39 +02:00
J. Fernando Sánchez
77d08fc592 Agent step can be a generator 2022-10-17 08:58:51 +02:00
J. Fernando Sánchez
0efcd24d90 Improve exporters 2022-10-16 21:57:30 +02:00
J. Fernando Sánchez
d9947c2c52 WIP: all tests pass
Documentation needs some improvement

The API has been simplified to only allow for ONE topology per
NetworkEnvironment.
This covers the main use case, and simplifies the code.
2022-10-16 17:56:23 +02:00
J. Fernando Sánchez
cd62c23cb9 WIP: all tests pass 2022-10-13 22:43:16 +02:00
J. Fernando Sánchez
f811ee18c5 WIP 2022-10-06 15:49:19 +02:00
J. Fernando Sánchez
0a9c6d8b19 WIP: removed stats 2022-09-16 18:14:16 +02:00
J. Fernando Sánchez
3dc56892c1 WIP: working config 2022-09-15 19:27:17 +02:00
J. Fernando Sánchez
e41dc3dae2 WIP 2022-09-13 18:16:31 +02:00
J. Fernando Sánchez
bbaed636a8 WIP 2022-07-19 17:18:02 +02:00
J. Fernando Sánchez
2116fe6f38 Bug fixes and minor improvements 2022-05-12 16:14:47 +02:00
J. Fernando Sánchez
affeeb9643 Update examples 2022-04-04 16:47:58 +02:00
J. Fernando Sánchez
c02e6ea2e8 Fix die bug 2022-03-07 11:17:27 +01:00
J. Fernando Sánchez
cb72aac980 Add random activation example 2022-03-07 10:48:59 +01:00
J. Fernando Sánchez
6c4f44b4cb Partial MESA compatibility and several fixes
Documentation for the new APIs is still a work in progress :)
2021-10-15 20:16:49 +02:00
J. Fernando Sánchez
af9a392a93 WIP: mesa compat
All tests pass but some features are still missing/unclear:

- Mesa agents do not have a `state`, so their "metrics" don't get stored. I will
probably refactor this to remove some magic in this regard. This should get rid
of the `_state` dictionary and the setitem/getitem magic.
- Simulation is still different from a runner. So far only Agent and
Environment/Model have been updated.
2021-10-15 13:36:39 +02:00
J. Fernando Sánchez
5d7e57675a WIP: mesa compatibility 2021-10-14 17:37:06 +02:00
J. Fernando Sánchez
05f7f49233 Refactoring v0.15.1
See CHANGELOG.md for a full list of changes

* Removed nxsim
* Refactored `agents.NetworkAgent` and `agents.BaseAgent`
* Refactored exporters
* Added stats to history
2020-11-19 23:58:47 +01:00
J. Fernando Sánchez
6690b6ee5f Fix incompatibility and bug in get_agents 2019-05-16 19:59:46 +02:00
J. Fernando Sánchez
d1006bd55c WIP: exporters 2019-04-29 18:47:15 +02:00
J. Fernando Sánchez
9bc036d185 WIP: exporters 2019-04-26 19:22:45 +02:00
J. Fernando Sánchez
a3ea434f23 0.13.8 2019-02-19 21:17:19 +01:00
J. Fernando Sánchez
65f6aa72f3 fix timeout in FSM. Improve logs 2019-02-01 19:05:07 +01:00
J. Fernando Sánchez
09e14c6e84 Add generator and programmatic examples 2018-12-20 19:25:33 +01:00
J. Fernando Sánchez
b41927d7bf remove leftover import in example 2018-12-08 20:35:02 +01:00
J. Fernando Sánchez
2e28b36f6e Python3.7, testing and bug fixes
* Upgrade to python3.7 and pandas 0.3.4 because pandas has dropped support for
python 3.4 -> There are some API changes in pandas, and I've update the code
accordingly.
* Set pytest as the default test runner
2018-12-08 18:53:06 +01:00
J. Fernando Sánchez
ff1df62eec All tests pass 2018-12-08 18:17:21 +01:00
J. Fernando Sánchez
fc48ed7e09 Added history class
Now the environment does not deal with history directly, it delegates it to a
specific class. The analysis also uses history instances instead of either
using the database directly or creating a proxy environment.

This should make it easier to change the implementation in the future.

In fact, the change was motivated by the large size of the csv files in previous
versions. This new implementation only stores results in deltas, and it fills
any necessary values when needed.
2018-05-04 10:01:49 +02:00
J. Fernando Sánchez
7d1c800490 Parallelism and granular exporting options
* Graphs are not saved by default (not backwards compatible)
* Modified newsspread examples
* More granular options to save results (exporting to CSV and GEXF are now
optional)
* Updated tutorial to include exporting options
* Removed references from environment to simulation
* Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 14:44:46 +01:00
J. Fernando Sánchez
a7c51742f6 Improved docs
Fixed several bugs
Added convenience methods in soil.analysis
2017-10-19 18:06:33 +02:00
J. Fernando Sánchez
78364d89d5 Fix gephi representation. Add sqlite 2017-10-17 19:48:56 +02:00
J. Fernando Sánchez
af76f54a28 Added rabbits 2017-10-16 19:23:52 +02:00
J. Fernando Sánchez
e1be3a730e WIP soil
* Pandas integration
* Improved environment
* Logging and data dumps
* Tests
* Added Finite State Machine models
* Rewritten ipython notebook and documentation
2017-07-03 18:17:52 +02:00