* Improve extra requirement handling
* New mechanism to handle parameters beforehand in chained
calls, and the ability to get help on available parameters in chained
calls (through `?help`).
* Redefined Analysis, to reflect the new ontology
* Add parameters as an entity in the schema
* Update examples to include analyses and parameters
* Add processing plugins, with an interface similar to analysis plugins
* Update tests
* Avoid duplication in split plugin
Closes#51
Squashed commit of the following:
commit d145a852e7
commit 6a1069780b
commit ca69bddc17
commit aa35e62a27
* Add option to add multiple plugins
* Improve UI hints for collapsed parameters
* Refactored plugins without requirements
* Hide evaluation tab for the moment. You can see it by adding "?evaluation" to
the URL.
* Add Topic model
* Add PDB post-mortem debugging
* Add logger to plugins (`self.log`)
* Add NLTK resource auto-download
* Force installation of requirements even if adding doesn't work
* Add a method to find files in several possible locations. Now the plugin.open
method will try these locations IF the file is to be opened in read mode.
Otherwise only the SENPY_DATA folder will be used (to avoid writing to the
package folder).
* Fixed Options for extra_params in UI
* Enhanced meta-programming for models
* Plugins can be imported from a python file if they're named
`senpy_<whatever>.py>` (no need for `.senpy` anymore!)
* Add docstings and tests to most plugins
* Read plugin description from the docstring
* Refactor code to get rid of unnecessary `.senpy`s
* Load models, plugins and utils into the main namespace (see __init__.py)
* Enhanced plugin development/experience with utils (easy_test, easy_serve)
* Fix bug in check_template that wouldn't check objects
* Make model defaults a private variable
* Add option to list loaded plugins in CLI
* Update docs
* Refactored BaseModel for efficiency
* Added plugin metaclass to keep track of plugin types
* Moved plugins to examples dir (in a previous commit)
* Simplified validation in parse_params
* Added convenience methods to mock requests in tests
* Changed help schema to use `.valid_parameters` instead of `.parameters`,
which was used in results to show parameters provided by the user.
* Improved UI
* Added basic parameters
* Fixed bugs in parameter handling
* Refactored and cleaned code
We've changed the way plugins are activated, and removed the notion of
deactivated plugins.
Now plugins activate asynchronously.
When calling a plugin, it will be activated if it wasn't, and the call will wait
for the plugin to be fully activated.
Closes#28 for python 2.
Apparently, process pools are not contexts in python 2.7.
On the other hand, in py2 you cannot pickle instance methods, so
you have to implement Pool tasks as independent functions.
Closes#28
Added:
* Async test (still missing one that includes the IOLoop)
* Async plugin under tests. To manually try async functionalities:
```
senpy -f tests/
```
It turns out setting "plugins" as a @list in the context causes the
"plugins" property to expand to its full name.
Removing the type causes a regression of #17, which I initially missed
because the test in #17 was wrong.
Closes#26
* Improved debugging (back to using Flask's built-in mechanisms)
* Recursive model loading from json
* Added DEVPORT to Makefile
* Accept json-ld input. Closes#16
* Improved Exception handling in client
* Modified default plugin selection to only include analysis plugins
* More tests
