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* Improve extra requirement handling * New mechanism to handle parameters beforehand in chained calls, and the ability to get help on available parameters in chained calls (through `?help`). * Redefined Analysis, to reflect the new ontology * Add parameters as an entity in the schema * Update examples to include analyses and parameters * Add processing plugins, with an interface similar to analysis plugins * Update tests * Avoid duplication in split plugin Closes #51 Squashed commit of the following: commitd145a852e7
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