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soil/soil/network.py

84 lines
2.1 KiB
Python

from __future__ import annotations
from typing import Dict
import os
import sys
import random
import networkx as nx
from . import config, serialization, basestring
def from_topology(topology, dir_path: str = None):
if topology is None:
return nx.Graph()
if isinstance(topology, nx.Graph):
return topology
# If it's a dict, assume it's a node-link graph
if isinstance(topology, dict):
try:
return nx.json_graph.node_link_graph(topology)
except Exception as ex:
raise ValueError("Unknown topology format")
# Otherwise, treat like a path
path = topology
if dir_path and not os.path.isabs(path):
path = os.path.join(dir_path, path)
extension = os.path.splitext(path)[1][1:]
kwargs = {}
if extension == "gexf":
kwargs["version"] = "1.2draft"
kwargs["node_type"] = int
try:
method = getattr(nx.readwrite, "read_" + extension)
except AttributeError:
raise AttributeError("Unknown format")
return method(path, **kwargs)
def from_params(generator, dir_path: str = None, **params):
if dir_path not in sys.path:
sys.path.append(dir_path)
method = serialization.deserializer(
generator,
known_modules=[
"networkx.generators",
],
)
return method(**params)
def find_unassigned(G, shuffle=False, random=random):
"""
Link an agent to a node in a topology.
If node_id is None, a node without an agent_id will be found.
"""
candidates = list(G.nodes(data=True))
if shuffle:
random.shuffle(candidates)
for next_id, data in candidates:
if "agent" not in data:
return next_id
return None
def dump_gexf(G, f):
for node in G.nodes():
if "pos" in G.nodes[node]:
G.nodes[node]["viz"] = {
"position": {
"x": G.nodes[node]["pos"][0],
"y": G.nodes[node]["pos"][1],
"z": 0.0,
}
}
del G.nodes[node]["pos"]
nx.write_gexf(G, f, version="1.2draft")