9 Commits (ff1df62eecc93de28d9ac0140e626258d9dca929)

Author	SHA1	Message	Date
J. Fernando Sánchez	ff1df62eec	All tests pass	6 years ago
J. Fernando Sánchez	9165979b49	merge visualization branch ... The web server is included as a submodule. The dependencies for the web (tornado) are not installed by default, but they can be installed as an extra: ``` pip install soil[web] ``` Once installed, the soil web can be used like this: ``` soil-web OR python -m soil.web ``` There are other minor changes: * History re-connects to the sqlite database if it is used from a different thread. * Environment accepts additional parameters (so it can run simulations with `visualization_params` or any other in the future). * The simulator class is no longer necessary * Logging is done in the same thread, and the simulation is run in a separate one. This had to be done because it was creating some problems with tornado not being able to find the current thread during logs, which caused hundreds of repeated lines in the web "console". * The player is slightly modified in this version. I noticed that when the visualization was playing, if you clicked somewhere it would change for a second, and then go back to the previous place. The code for the playback seemed too complex, especially speed control, so I rewrote some parts. I might've introduced new bugs.	6 years ago
J. Fernando Sánchez	fc48ed7e09	Added history class ... Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.	6 years ago
J. Fernando Sánchez	497c8a55db	Add workaround for geometric models ... Closes soil/soil#4	6 years ago
J. Fernando Sánchez	7d1c800490	Parallelism and granular exporting options ... * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).	7 years ago
J. Fernando Sánchez	a7c51742f6	Improved docs ... Fixed several bugs Added convenience methods in soil.analysis	7 years ago
J. Fernando Sánchez	78364d89d5	Fix gephi representation. Add sqlite	7 years ago
J. Fernando Sánchez	af76f54a28	Added rabbits	7 years ago
J. Fernando Sánchez	e1be3a730e	WIP soil ... * Pandas integration * Improved environment * Logging and data dumps * Tests * Added Finite State Machine models * Rewritten ipython notebook and documentation	7 years ago