22 Commits (6c4f44b4cb5d553ecb78cd6961afc89deaf945a1)

Author	SHA1	Message	Date
J. Fernando Sánchez	6c4f44b4cb	Partial MESA compatibility and several fixes ... Documentation for the new APIs is still a work in progress :)	3 years ago
J. Fernando Sánchez	5d7e57675a	WIP: mesa compatibility	3 years ago
J. Fernando Sánchez	e860bdb922	v0.15.2 ... See CHANGELOG.md for a complete list of changes	3 years ago
J. Fernando Sánchez	05f7f49233	Refactoring v0.15.1 ... See CHANGELOG.md for a full list of changes * Removed nxsim * Refactored `agents.NetworkAgent` and `agents.BaseAgent` * Refactored exporters * Added stats to history	4 years ago
J. Fernando Sánchez	97835b3d10	Clean up exporters	5 years ago
J. Fernando Sánchez	d1006bd55c	WIP: exporters	5 years ago
J. Fernando Sánchez	9bc036d185	WIP: exporters	5 years ago
J. Fernando Sánchez	65f6aa72f3	fix timeout in FSM. Improve logs	5 years ago
J. Fernando Sánchez	9749f4ca14	Fix multithreading ... Multithreading needs pickling to work. Pickling/unpickling didn't work in some situations, like when the environment_agents parameter was left blank. This was due to two reasons: 1) agents and history didn't have a setstate method, and some of their attributes cannot be pickled (generators, sqlite connection) 2) the environment was adding generators (agents) to its state. This fixes the situation by restricting the keys that the environment exports when it pickles, and by adding the set/getstate methods in agents. The resulting pickles should contain enough information to inspect them (history, state values, etc), but very limited.	6 years ago
J. Fernando Sánchez	ff1df62eec	All tests pass	6 years ago
J. Fernando Sánchez	fc48ed7e09	Added history class ... Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.	6 years ago
J. Fernando Sánchez	73c90887e8	Fix pip installation	6 years ago
J. Fernando Sánchez	7d1c800490	Parallelism and granular exporting options ... * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).	7 years ago
J. Fernando Sánchez	a4b32afa2f	Fix py3.4 and pypi bugs	7 years ago
J. Fernando Sánchez	a7c51742f6	Improved docs ... Fixed several bugs Added convenience methods in soil.analysis	7 years ago
J. Fernando Sánchez	78364d89d5	Fix gephi representation. Add sqlite	7 years ago
J. Fernando Sánchez	af76f54a28	Added rabbits	7 years ago
J. Fernando Sánchez	dbc182c6d0	Compatibility with py3.4	7 years ago
J. Fernando Sánchez	eafecc9e5e	Make py3 compatibility explicit	7 years ago
J. Fernando Sánchez	e8988015e2	Add more options to the command line	7 years ago
J. Fernando Sánchez	347d295b09	Updated to match NetworkX's 2.0 API	7 years ago
J. Fernando Sánchez	e1be3a730e	WIP soil ... * Pandas integration * Improved environment * Logging and data dumps * Tests * Added Finite State Machine models * Rewritten ipython notebook and documentation	7 years ago