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https://github.com/gsi-upm/soil
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Fix py3.4 and pypi bugs
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commit
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@ -4,3 +4,4 @@ networkx
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numpy
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numpy
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matplotlib
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matplotlib
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pyyaml
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pyyaml
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pandas
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@ -1,61 +0,0 @@
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---
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name: ControlModelM2_sim
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max_time: 50
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num_trials: 1
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network_params:
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generator: barabasi_albert_graph
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n: 100
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m: 2
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network_agents:
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- agent_type: ControlModelM2
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weight: 0.1
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state:
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id: 1
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- agent_type: ControlModelM2
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weight: 0.9
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state:
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id: 0
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environment_params:
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prob_neutral_making_denier: 0.035
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prob_infect: 0.075
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prob_cured_healing_infected: 0.035
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prob_cured_vaccinate_neutral: 0.035
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prob_vaccinated_healing_infected: 0.035
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prob_vaccinated_vaccinate_neutral: 0.035
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prob_generate_anti_rumor: 0.035
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standard_variance: 0.055
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---
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name: SISA_sm
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max_time: 50
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num_trials: 2
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network_params:
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generator: erdos_renyi_graph
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n: 1000
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p: 0.05
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#other_agents:
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# - agent_type: DrawingAgent
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network_agents:
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- agent_type: SISaModel
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weight: 1
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state:
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id: content
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- agent_type: SISaModel
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weight: 1
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state:
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id: neutral
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- agent_type: SISaModel
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weight: 1
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state:
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id: discontent
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environment_params:
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neutral_discontent_spon_prob: 0.04
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neutral_discontent_infected_prob: 0.04
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neutral_content_spon_prob: 0.18
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neutral_content_infected_prob: 0.02
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discontent_neutral: 0.13
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discontent_content: 0.07
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variance_d_c: 0.02
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content_discontent: 0.009
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variance_c_d: 0.003
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content_neutral: 0.088
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standard_variance: 0.055
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@ -4,7 +4,7 @@ import os
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import pdb
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import pdb
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import logging
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import logging
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__version__ = "0.10"
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__version__ = "0.10.1"
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try:
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try:
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basestring
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basestring
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@ -1,36 +1,4 @@
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import importlib
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from . import main
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import sys
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import os
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import argparse
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import logging
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from . import simulation
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logger = logging.getLogger(__name__)
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def main():
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parser = argparse.ArgumentParser(description='Run a SOIL simulation')
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parser.add_argument('file', type=str,
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nargs="?",
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default='simulation.yml',
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help='python module containing the simulation configuration.')
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parser.add_argument('--module', '-m', type=str,
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help='file containing the code of any custom agents.')
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parser.add_argument('--dry-run', '--dry', action='store_true',
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help='Do not store the results of the simulation.')
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parser.add_argument('--output', '-o', type=str,
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help='folder to write results to. It defaults to the current directory.')
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args = parser.parse_args()
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if args.module:
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sys.path.append(os.getcwd())
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importlib.import_module(args.module)
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print('Loading config file: {}'.format(args.file, args.output))
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simulation.run_from_config(args.file, dump=not args.dry_run, results_dir=args.output)
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if __name__ == '__main__':
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if __name__ == '__main__':
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main()
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main()
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@ -145,15 +145,13 @@ class SoilEnvironment(nxsim.NetworkEnvironment):
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def __getitem__(self, key):
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def __getitem__(self, key):
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if isinstance(key, tuple):
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if isinstance(key, tuple):
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values = {"agent_id": key[0],
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values = [("agent_id", key[0]),
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"t_step": key[1],
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("t_step", key[1]),
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"key": key[2],
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("key", key[2]),
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"value": None,
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("value", None),
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"value_type": None
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("value_type", None)]
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}
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fields = list(k for k, v in values if v is None)
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conditions = " and ".join("{}='{}'".format(k, v) for k, v in values if v is not None)
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fields = list(k for k, v in values.items() if v is None)
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conditions = " and ".join("{}='{}'".format(k, v) for k, v in values.items() if v is not None)
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query = """SELECT {fields} from history""".format(fields=",".join(fields))
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query = """SELECT {fields} from history""".format(fields=",".join(fields))
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if conditions:
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if conditions:
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