Big refactor v0.30

All test pass, except for the TestConfig suite, which is not too critical as the
plan for this version onwards is to avoid configuration as much as possible.

examples/terrorism/TerroristNetworkModel.yml

@@ -1,62 +0,0 @@
-name: TerroristNetworkModel_sim
-max_steps: 150 
-num_trials: 1
-model_params:
-  network_params:
-    generator: random_geometric_graph
-    radius: 0.2
-    # generator: geographical_threshold_graph
-    # theta: 20
-    n: 100
-  network_agents:
-    - agent_class: TerroristNetworkModel.TerroristNetworkModel
-      weight: 0.8
-      state:
-        id: civilian  # Civilians
-    - agent_class: TerroristNetworkModel.TerroristNetworkModel
-      weight: 0.1
-      state:
-        id: leader    # Leaders
-    - agent_class: TerroristNetworkModel.TrainingAreaModel
-      weight: 0.05
-      state:
-        id: terrorist # Terrorism
-    - agent_class: TerroristNetworkModel.HavenModel
-      weight: 0.05
-      state:
-        id: civilian  # Civilian
-
-  # TerroristSpreadModel
-  information_spread_intensity: 0.7
-  terrorist_additional_influence: 0.035
-  max_vulnerability: 0.7
-  prob_interaction: 0.5
-
-  # TrainingAreaModel and HavenModel
-  training_influence: 0.20
-  haven_influence: 0.20
-
-  # TerroristNetworkModel
-  vision_range: 0.30
-  sphere_influence: 2
-  weight_social_distance: 0.035
-  weight_link_distance: 0.035
-
-visualization_params:
-  # Icons downloaded from https://www.iconfinder.com/
-  shape_property: agent
-  shapes:
-    TrainingAreaModel: target
-    HavenModel: home
-    TerroristNetworkModel: person
-  colors:
-    - attr_id: civilian
-      color: '#40de40'
-    - attr_id: terrorist
-      color: red
-    - attr_id: leader
-      color: '#c16a6a'
-  background_image: 'map_4800x2860.jpg'
-  background_opacity: '0.9'
-  background_filter_color: 'blue'
-skip_test: true  # This simulation takes too long for automated tests.

examples/terrorism/TerroristNetworkModel_sim.py

@@ -1,6 +1,43 @@
 import networkx as nx
-from soil.agents import Geo, NetworkAgent, FSM, state, default_state
-from soil import Environment
+from soil.agents import Geo, NetworkAgent, FSM, custom, state, default_state
+from soil import Environment, Simulation
+from soil.parameters import *
+
+
+class TerroristEnvironment(Environment):
+    generator: function = nx.random_geometric_graph
+    n: Integer = 100
+    radius: Float = 0.2
+
+    information_spread_intensity: probability = 0.7
+    terrorist_additional_influence: probability = 0.03
+    terrorist_additional_influence: probability = 0.035
+    max_vulnerability: probability = 0.7
+    prob_interaction: probability = 0.5
+
+    # TrainingAreaModel and HavenModel
+    training_influence: probability = 0.20
+    haven_influence: probability = 0.20
+
+    # TerroristNetworkModel
+    vision_range: Float = 0.30
+    sphere_influence: Integer = 2
+    weight_social_distance: Float = 0.035
+    weight_link_distance: Float = 0.035
+
+    ratio_civil: probability = 0.8
+    ratio_leader: probability = 0.1
+    ratio_training: probability = 0.05
+    ratio_haven: probability = 0.05
+
+    def init(self):
+        self.create_network(generator=self.generator, n=self.n, radius=self.radius)
+        self.populate_network([
+            TerroristNetworkModel.w(state_id='civilian'),
+            TerroristNetworkModel.w(state_id='leader'),
+            TrainingAreaModel,
+            HavenModel
+        ], [self.ratio_civil, self.ratio_leader, self.ratio_trainig, self.ratio_heaven])
 
 
 class TerroristSpreadModel(FSM, Geo):
@@ -17,36 +54,21 @@ class TerroristSpreadModel(FSM, Geo):
         prob_interaction
     """
 
-    def __init__(self, model=None, unique_id=0, state=()):
-        super().__init__(model=model, unique_id=unique_id, state=state)
-
-        self.information_spread_intensity = model.environment_params[
-            "information_spread_intensity"
-        ]
-        self.terrorist_additional_influence = model.environment_params[
-            "terrorist_additional_influence"
-        ]
-        self.prob_interaction = model.environment_params["prob_interaction"]
-
-        if self["id"] == self.civilian.id:  # Civilian
-            self.mean_belief = self.random.uniform(0.00, 0.5)
-        elif self["id"] == self.terrorist.id:  # Terrorist
+    def init(self):
+        if self.state_id == self.civilian.id:  # Civilian
+            self.mean_belief = self.model.random.uniform(0.00, 0.5)
+        elif self.state_id == self.terrorist.id:  # Terrorist
             self.mean_belief = self.random.uniform(0.8, 1.00)
-        elif self["id"] == self.leader.id:  # Leader
+        elif self.state_id == self.leader.id:  # Leader
             self.mean_belief = 1.00
         else:
             raise Exception("Invalid state id: {}".format(self["id"]))
 
-        if "min_vulnerability" in model.environment_params:
-            self.vulnerability = self.random.uniform(
-                model.environment_params["min_vulnerability"],
-                model.environment_params["max_vulnerability"],
-            )
-        else:
-            self.vulnerability = self.random.uniform(
-                0, model.environment_params["max_vulnerability"]
-            )
+        self.vulnerability = self.random.uniform(
+            self.get("min_vulnerability", 0), self.get("max_vulnerability", 1)
+        )
 
+    @default_state
     @state
     def civilian(self):
         neighbours = list(self.get_neighbors(agent_class=TerroristSpreadModel))
@@ -287,3 +309,32 @@ class TerroristNetworkModel(TerroristSpreadModel):
             return nx.shortest_path_length(self.G, self.id, target)
         except nx.NetworkXNoPath:
             return float("inf")
+
+
+sim = Simulation(
+    model=TerroristEnvironment,
+    num_trials=1,
+    name="TerroristNetworkModel_sim",
+    max_steps=150,
+    skip_test=True,
+    dry_run=True,
+)
+
+# TODO: integrate visualization
+# visualization_params:
+#   # Icons downloaded from https://www.iconfinder.com/
+#   shape_property: agent
+#   shapes:
+#     TrainingAreaModel: target
+#     HavenModel: home
+#     TerroristNetworkModel: person
+#   colors:
+#     - attr_id: civilian
+#       color: '#40de40'
+#     - attr_id: terrorist
+#       color: red
+#     - attr_id: leader
+#       color: '#c16a6a'
+#   background_image: 'map_4800x2860.jpg'
+#   background_opacity: '0.9'
+#   background_filter_color: 'blue'