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soil/examples/newsspread/NewsSpread.ipynb

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Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
{
"cells": [
{
"cell_type": "code",
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"execution_count": 4,
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"metadata": {
"ExecuteTime": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"end_time": "2017-11-08T16:22:30.732107Z",
"start_time": "2017-11-08T17:22:30.059855+01:00"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
},
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"collapsed": true
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
},
Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
"outputs": [],
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"source": [
"import soil\n",
"import networkx as nx\n",
" \n",
"%load_ext autoreload\n",
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"%autoreload 2"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# To display plots in the notebook"
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {
"ExecuteTime": {
"end_time": "2017-11-08T16:22:35.580593Z",
"start_time": "2017-11-08T17:22:35.542745+01:00"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Populating the interactive namespace from numpy and matplotlib\n"
]
}
],
"source": [
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"%pylab inline\n",
"\n",
"from soil import *"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# News Spreading example with SOIL"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"In this example we three different kinds of models, which we combine in five types of simulation"
]
},
{
"cell_type": "code",
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"execution_count": 6,
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"metadata": {
"ExecuteTime": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"end_time": "2017-11-08T16:22:37.242327Z",
"start_time": "2017-11-08T17:22:37.087039+01:00"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"---\r\n",
"default_state: {}\r\n",
"load_module: newsspread\r\n",
"environment_agents: []\r\n",
"environment_params:\r\n",
" prob_neighbor_spread: 0.0\r\n",
" prob_tv_spread: 0.01\r\n",
"interval: 1\r\n",
"max_time: 30\r\n",
"name: Sim_all_dumb\r\n",
"network_agents:\r\n",
"- agent_type: DumbViewer\r\n",
" state:\r\n",
" has_tv: false\r\n",
" weight: 1\r\n",
"- agent_type: DumbViewer\r\n",
" state:\r\n",
" has_tv: true\r\n",
" weight: 1\r\n",
"network_params:\r\n",
" generator: barabasi_albert_graph\r\n",
" n: 500\r\n",
" m: 5\r\n",
"num_trials: 50\r\n",
"---\r\n",
"default_state: {}\r\n",
"load_module: newsspread\r\n",
"environment_agents: []\r\n",
"environment_params:\r\n",
" prob_neighbor_spread: 0.0\r\n",
" prob_tv_spread: 0.01\r\n",
"interval: 1\r\n",
"max_time: 30\r\n",
"name: Sim_half_herd\r\n",
"network_agents:\r\n",
"- agent_type: DumbViewer\r\n",
" state:\r\n",
" has_tv: false\r\n",
" weight: 1\r\n",
"- agent_type: DumbViewer\r\n",
" state:\r\n",
" has_tv: true\r\n",
" weight: 1\r\n",
"- agent_type: HerdViewer\r\n",
" state:\r\n",
" has_tv: false\r\n",
" weight: 1\r\n",
"- agent_type: HerdViewer\r\n",
" state:\r\n",
" has_tv: true\r\n",
" weight: 1\r\n",
"network_params:\r\n",
" generator: barabasi_albert_graph\r\n",
" n: 500\r\n",
" m: 5\r\n",
"num_trials: 50\r\n",
"---\r\n",
"default_state: {}\r\n",
"load_module: newsspread\r\n",
"environment_agents: []\r\n",
"environment_params:\r\n",
" prob_neighbor_spread: 0.0\r\n",
" prob_tv_spread: 0.01\r\n",
"interval: 1\r\n",
"max_time: 30\r\n",
"name: Sim_all_herd\r\n",
"network_agents:\r\n",
"- agent_type: HerdViewer\r\n",
" state:\r\n",
" has_tv: true\r\n",
Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
" id: neutral\r\n",
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
" weight: 1\r\n",
"- agent_type: HerdViewer\r\n",
" state:\r\n",
" has_tv: true\r\n",
" id: neutral\r\n",
" weight: 1\r\n",
"network_params:\r\n",
" generator: barabasi_albert_graph\r\n",
" n: 500\r\n",
" m: 5\r\n",
"num_trials: 50\r\n",
"---\r\n",
"default_state: {}\r\n",
"load_module: newsspread\r\n",
"environment_agents: []\r\n",
"environment_params:\r\n",
" prob_neighbor_spread: 0.0\r\n",
" prob_tv_spread: 0.01\r\n",
" prob_neighbor_cure: 0.1\r\n",
"interval: 1\r\n",
"max_time: 30\r\n",
"name: Sim_wise_herd\r\n",
"network_agents:\r\n",
"- agent_type: HerdViewer\r\n",
" state:\r\n",
" has_tv: true\r\n",
Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
" id: neutral\r\n",
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
" weight: 1\r\n",
"- agent_type: WiseViewer\r\n",
" state:\r\n",
" has_tv: true\r\n",
" weight: 1\r\n",
"network_params:\r\n",
" generator: barabasi_albert_graph\r\n",
" n: 500\r\n",
" m: 5\r\n",
"num_trials: 50\r\n",
"---\r\n",
"default_state: {}\r\n",
"load_module: newsspread\r\n",
"environment_agents: []\r\n",
"environment_params:\r\n",
" prob_neighbor_spread: 0.0\r\n",
" prob_tv_spread: 0.01\r\n",
" prob_neighbor_cure: 0.1\r\n",
"interval: 1\r\n",
"max_time: 30\r\n",
"name: Sim_all_wise\r\n",
"network_agents:\r\n",
"- agent_type: WiseViewer\r\n",
" state:\r\n",
" has_tv: true\r\n",
Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
" id: neutral\r\n",
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
" weight: 1\r\n",
"- agent_type: WiseViewer\r\n",
" state:\r\n",
" has_tv: true\r\n",
" weight: 1\r\n",
"network_params:\r\n",
" generator: barabasi_albert_graph\r\n",
" n: 500\r\n",
" m: 5\r\n",
"network_params:\r\n",
" generator: barabasi_albert_graph\r\n",
" n: 500\r\n",
" m: 5\r\n",
"num_trials: 50\r\n"
]
}
],
"source": [
"!cat NewsSpread.yml"
]
},
{
"cell_type": "code",
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"execution_count": 22,
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"metadata": {
"ExecuteTime": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"end_time": "2017-11-08T18:07:46.781745Z",
"start_time": "2017-11-08T19:07:41.146659+01:00"
},
"scrolled": true
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
},
"outputs": [],
"source": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"evodumb = analysis.read_data('soil_output/Sim_all_dumb/', process=analysis.get_count, group=True, keys=['id']);"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
]
},
{
"cell_type": "code",
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"execution_count": 23,
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"metadata": {
"ExecuteTime": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"end_time": "2017-11-08T18:07:50.696420Z",
"start_time": "2017-11-08T19:07:50.652496+01:00"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
}
},
"outputs": [
{
"data": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
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Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"text/plain": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
" id \n",
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Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
]
},
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"execution_count": 23,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"evodumb['mean']"
]
},
{
"cell_type": "code",
"execution_count": 24,
"metadata": {
"ExecuteTime": {
"end_time": "2017-11-08T18:08:01.093889Z",
"start_time": "2017-11-08T19:08:00.861308+01:00"
}
},
"outputs": [
{
"data": {
"text/plain": [
"<matplotlib.axes._subplots.AxesSubplot at 0x7f73a065ca20>"
]
},
"execution_count": 24,
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"metadata": {},
"output_type": "execute_result"
},
{
"data": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"image/png": "iVBORw0KGgoAAAANSUhEUgAAAXoAAAEKCAYAAAAcgp5RAAAABHNCSVQICAgIfAhkiAAAAAlwSFlz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\n33XOjXPOTQA+DzzvnLs
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"text/plain": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"<matplotlib.figure.Figure at 0x7f73a0830828>"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"evodumb['mean'].plot(yerr=evodumb['std'])"
]
},
{
"cell_type": "code",
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"execution_count": 25,
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"metadata": {
"ExecuteTime": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"end_time": "2017-11-08T18:08:31.598791Z",
"start_time": "2017-11-08T19:08:02.764487+01:00"
},
"collapsed": true
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
},
"outputs": [],
"source": [
"evodumb = analysis.read_data('soil_output/Sim_all_dumb/', group=True, process=analysis.get_count, keys=['id']);\n",
"evohalfherd = analysis.read_data('soil_output/Sim_half_herd/', group=True, process=analysis.get_count, keys=['id'])\n",
"evoherd = analysis.read_data('soil_output/Sim_all_herd/', group=True, process=analysis.get_count, keys=['id'])\n",
"evoherdwise = analysis.read_data('soil_output/Sim_wise_herd/', group=True, process=analysis.get_count, keys=['id'])\n",
Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
"evowise = analysis.read_data('soil_output/Sim_all_wise/', group=True, process=analysis.get_count, keys=['id'])"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
]
},
{
"cell_type": "code",
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"execution_count": 26,
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"metadata": {
"ExecuteTime": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"end_time": "2017-11-08T18:08:37.909477Z",
"start_time": "2017-11-08T19:08:36.873751+01:00"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
}
},
"outputs": [
{
"data": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"image/png": "iVBORw0KGgoAAAANSUhEUgAAAXoAAAEKCAYAAAAcgp5RAAAABHNCSVQICAgIfAhkiAAAAAlwSFlz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\n33XOjXPOTQA+DzzvnLs
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"text/plain": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"<matplotlib.figure.Figure at 0x7f73a1e63da0>"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
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Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"text/plain": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"<matplotlib.figure.Figure at 0x7f73a1e630f0>"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
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Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"text/plain": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"<matplotlib.figure.Figure at 0x7f73a1e63a90>"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"image/png": "iVBORw0KGgoAAAANSUhEUgAAAXoAAAEKCAYAAAAcgp5RAAAABHNCSVQICAgIfAhkiAAAAAlwSFlz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\n8hrTF063BouzRwkdldo
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"text/plain": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"<matplotlib.figure.Figure at 0x7f73a1e63cc0>"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"image/png": "iVBORw0KGgoAAAANSUhEUgAAAXoAAAEKCAYAAAAcgp5RAAAABHNCSVQICAgIfAhkiAAAAAlwSFlz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\noLXuUko5gGeAeUA9cLX
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"text/plain": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"<matplotlib.figure.Figure at 0x7f73a1f6d198>"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"for i in [evodumb, evohalfherd, evoherd, evoherdwise, evowise]:\n",
" i['mean'].plot(yerr=i['std'])"
]
},
{
"cell_type": "code",
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"execution_count": 27,
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"metadata": {
"ExecuteTime": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"end_time": "2017-11-08T18:08:44.132725Z",
"start_time": "2017-11-08T19:08:43.880341+01:00"
Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
},
"scrolled": true
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
},
"outputs": [
{
"data": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"image/png": "iVBORw0KGgoAAAANSUhEUgAAA2IAAAEXCAYAAADP3/fJAAAABHNCSVQICAgIfAhkiAAAAAlwSFlz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\nH1g53+/hVCDWhcLXBE8
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"text/plain": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"<matplotlib.figure.Figure at 0x7f73a1d84dd8>"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"diff = evodumb['mean']-evohalfherd['mean']\n",
Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
"m = evodumb['max'].loc[0].sum()\n",
"diff = diff / m\n",
"diff.plot(yerr=(evodumb['std']+evoherd['std'])/m,\n",
" title='Comparing the Herd and Dumb behaviours: normalized difference and error in number of agents in each state when using 50% herd agents.');"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
]
},
{
"cell_type": "code",
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"execution_count": 28,
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"metadata": {
"ExecuteTime": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"end_time": "2017-11-08T18:08:45.320345Z",
"start_time": "2017-11-08T19:08:45.068706+01:00"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
}
},
"outputs": [
{
"data": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"image/png": "iVBORw0KGgoAAAANSUhEUgAAA2oAAAEXCAYAAADcCLc9AAAABHNCSVQICAgIfAhkiAAAAAlwSFlz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\n30flY7A1/m59lYsX/LG
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"text/plain": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"<matplotlib.figure.Figure at 0x7f73a200d2e8>"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
]
},
Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"diff = evodumb['mean']-evoherd['mean']\n",
"m = evodumb['max'].loc[0].sum()\n",
"diff = diff / m\n",
"diff.plot(yerr=(evodumb['std']+evoherd['std'])/m,\n",
" title='Comparing the Herd and Dumb behaviours: normalized difference and error in number of agents in each state when using 100% herd agents.');"
]
},
{
"cell_type": "code",
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"execution_count": 29,
Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
"metadata": {
"ExecuteTime": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"end_time": "2017-11-08T18:08:46.641058Z",
"start_time": "2017-11-08T19:08:46.052870+01:00"
Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
}
},
"outputs": [
{
"data": {
"text/plain": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"<matplotlib.axes._subplots.AxesSubplot at 0x7f73a1cd97b8>"
Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
]
},
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"execution_count": 29,
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"metadata": {},
"output_type": "execute_result"
},
{
"data": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
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Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"text/plain": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"<matplotlib.figure.Figure at 0x7f73a1e6d8d0>"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"image/png": "iVBORw0KGgoAAAANSUhEUgAAAYQAAAEKCAYAAAASByJ7AAAABHNCSVQICAgIfAhkiAAAAAlwSFlz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\nXFwcwcHBjBw5kkmTJjF
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
"text/plain": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"<matplotlib.figure.Figure at 0x7f73a1e6d438>"
Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
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Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
"text/plain": [
Added history class Now the environment does not deal with history directly, it delegates it to a specific class. The analysis also uses history instances instead of either using the database directly or creating a proxy environment. This should make it easier to change the implementation in the future. In fact, the change was motivated by the large size of the csv files in previous versions. This new implementation only stores results in deltas, and it fills any necessary values when needed.
2018-05-04 08:01:49 +00:00
"<matplotlib.figure.Figure at 0x7f73a1e6de10>"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
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Parallelism and granular exporting options * Graphs are not saved by default (not backwards compatible) * Modified newsspread examples * More granular options to save results (exporting to CSV and GEXF are now optional) * Updated tutorial to include exporting options * Removed references from environment to simulation * Added parallelism to simulations (can be turned off with a flag or argument).
2017-11-01 13:44:46 +00:00
"(evohalfherd['std']/m).plot()\n",
"(evodumb['std']/m).plot()\n",
"(evowise['std']/m).plot()"
Improved docs Fixed several bugs Added convenience methods in soil.analysis
2017-10-18 18:28:42 +00:00
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