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sitc/ml2/3_1_Read_Data.ipynb
Carlos A. Iglesias 842b6307f1 Updated notebooks
2019-03-06 17:46:12 +01:00

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"source": [
"![](images/EscUpmPolit_p.gif \"UPM\")"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Course Notes for Learning Intelligent Systems"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Department of Telematic Engineering Systems, Universidad Politécnica de Madrid, © Carlos A. Iglesias"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## [Introduction to Machine Learning II](3_0_0_Intro_ML_2.ipynb)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Table of Contents\n",
"\n",
"* [The Titanic dataset](#The-Titanic-dataset)\n",
"* [Reading Data](#Reading-Data)\n",
"* [Reading Data from a File](#Reading-Data-from-a-File)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# The Titanic dataset"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"In this session we will work with the Titanic dataset. This dataset is provided by [Kaggle](http://www.kaggle.com). Kaggle is a crowdsourcing platform that organizes competitions where researchers and companies post their data and users compete to obtain the best models.\n",
"\n",
"![Titanic](images/titanic.jpg)\n",
"\n",
"\n",
"The main objective is predicting which passengers survived the sinking of the Titanic.\n",
"\n",
"The data is available [here](https://www.kaggle.com/c/titanic/data). There are two files, one for training ([train.csv](files/data-titanic/train.csv)) and another file for testing [test.csv](files/data-titanic/test.csv). A local copy has been included in this notebook under the folder *data-titanic*.\n",
"\n",
"\n",
"Here follows a description of the variables.\n",
"\n",
"|Variable | Description| Values|\n",
"|-------------------------------|\n",
"| survival| Survival| (0 = No; 1 = Yes)|\n",
"|Pclass |Name | |\n",
"|Sex |Sex | male, female|\n",
"|Age |Age|\n",
"|SibSp |Number of Siblings/Spouses Aboard||\n",
"|Parch |Number of Parents/Children Aboard||\n",
"|Ticket|Ticket Number||\n",
"|Fare |Passenger Fare||\n",
"|Cabin |Cabin||\n",
"|Embarked |Port of Embarkation| (C = Cherbourg; Q = Queenstown; S = Southampton)|\n",
"\n",
"\n",
"The definitions used for SibSp and Parch are:\n",
"* *Sibling*: Brother, Sister, Stepbrother, or Stepsister of Passenger Aboard Titanic\n",
"* *Spouse*: Husband or Wife of Passenger Aboard Titanic (Mistresses and Fiances Ignored)\n",
"* *Parent*: Mother or Father of Passenger Aboard Titanic\n",
"* *Child*: Son, Daughter, Stepson, or Stepdaughter of Passenger Aboard Titanic"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Reading Data"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"In the previous dataset we load a bundle dataset in scikit-learn. In this notebook we are going to learn how to read from a file or a url using the Pandas library."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Reading Data from a File"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import numpy as np\n",
"import pandas as pd\n",
"from pandas import Series, DataFrame\n",
"\n",
"df = pd.read_csv('data-titanic/train.csv')\n",
"df"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# we can get the number of samples and features\n",
"df.shape"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"#I can read only a number of rows and tell where the header is, among other options.\n",
"df = df = pd.read_csv('data-titanic/train.csv', header=0, nrows=5)\n",
"df"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Pandas provides methods for reading other formats, such as Excel (*read_excel()*), JSON (*read_json()*), or HTML (*read_html()*), look at the [documentation](http://pandas.pydata.org/pandas-docs/stable/api.html#input-output) for more details."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Reading data from a URL"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import pandas as pd\n",
"#We get a URL with raw content (not HTML one)\n",
"url = \"https://raw.githubusercontent.com/gsi-upm/sitc/master/ml2/data-titanic/train.csv\"\n",
"df = pd.read_csv(url)\n",
"df"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"An alternative option is reading the file with the library *requests* and then use *pandas*."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# First we open the file\n",
"import pandas as pd\n",
"import io\n",
"import requests\n",
"url = \"https://raw.githubusercontent.com/gsi-upm/sitc/master/ml2/data-titanic/train.csv\"\n",
"s = requests.get(url, stream=True).content\n",
"#Print the first 320 characters for understanding how it works\n",
"s[:320]"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"df = pd.read_csv(io.StringIO(s.decode('utf-8')))\n",
"df"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## References"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"* [Pandas API input-output](http://pandas.pydata.org/pandas-docs/stable/api.html#input-output)\n",
"* [Pandas API - pandas.read_csv](http://pandas.pydata.org/pandas-docs/stable/generated/pandas.read_csv.html)\n",
"* [DataFrame](http://pandas.pydata.org/pandas-docs/stable/dsintro.html)\n",
"* [An introduction to NumPy and Scipy](http://www.engr.ucsb.edu/~shell/che210d/numpy.pdf)\n",
"* [NumPy tutorial](https://docs.scipy.org/doc/numpy-dev/user/quickstart.html)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Licence"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"The notebook is freely licensed under under the [Creative Commons Attribution Share-Alike license](https://creativecommons.org/licenses/by/2.0/). \n",
"\n",
"© Carlos A. Iglesias, Universidad Politécnica de Madrid."
]
}
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