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soil/soil/environment.py

323 lines
10 KiB
Python

from __future__ import annotations
import os
import sqlite3
import math
import random
from time import time as current_time
from copy import deepcopy
from networkx.readwrite import json_graph
import networkx as nx
from mesa import Model
from tsih import Record
from . import serialization, agents, analysis, utils, time, config
# These properties will be copied when pickling/unpickling the environment
_CONFIG_PROPS = [ 'name',
'states',
'default_state',
'interval',
]
class Environment(Model):
"""
The environment is key in a simulation. It contains the network topology,
a reference to network and environment agents, as well as the environment
params, which are used as shared state between agents.
The environment parameters and the state of every agent can be accessed
both by using the environment as a dictionary or with the environment's
:meth:`soil.environment.Environment.get` method.
"""
def __init__(self, name=None,
network_agents=None,
environment_agents=None,
states=None,
default_state=None,
interval=1,
network_params=None,
seed=None,
topology=None,
schedule=None,
initial_time=0,
environment_params=None,
dir_path=None,
**kwargs):
super().__init__()
self.schedule = schedule
if schedule is None:
self.schedule = time.TimedActivation()
self.name = name or 'UnnamedEnvironment'
seed = seed or current_time()
random.seed(seed)
if isinstance(states, list):
states = dict(enumerate(states))
self.states = deepcopy(states) if states else {}
self.default_state = deepcopy(default_state) or {}
if topology is None:
network_params = network_params or {}
topology = serialization.load_network(network_params,
dir_path=dir_path)
if not topology:
topology = nx.Graph()
self.G = nx.Graph(topology)
self.environment_params = environment_params or {}
self.environment_params.update(kwargs)
self._env_agents = {}
self.interval = interval
self['SEED'] = seed
if network_agents:
distro = agents.calculate_distribution(network_agents)
self.network_agents = agents._convert_agent_types(distro)
else:
self.network_agents = []
environment_agents = environment_agents or []
if environment_agents:
distro = agents.calculate_distribution(environment_agents)
environment_agents = agents._convert_agent_types(distro)
self.environment_agents = environment_agents
self.logger = utils.logger.getChild(self.name)
@staticmethod
def from_config(conf: config.Config, trial_id, **kwargs) -> Environment:
'''Create an environment for a trial of the simulation'''
conf = config.Config(conf, **kwargs)
conf.seed = '{}_{}'.format(conf.seed, trial_id)
conf.name = '{}_trial_{}'.format(conf.name, trial_id).replace('.', '-')
opts = conf.environment_params.copy()
opts.update(conf)
opts.update(kwargs)
env = serialization.deserialize(conf.environment_class)(**opts)
return env
@property
def now(self):
if self.schedule:
return self.schedule.time
raise Exception('The environment has not been scheduled, so it has no sense of time')
@property
def agents(self):
yield from self.environment_agents
yield from self.network_agents
@property
def environment_agents(self):
for ref in self._env_agents.values():
yield ref
@environment_agents.setter
def environment_agents(self, environment_agents):
self._environment_agents = environment_agents
self._env_agents = agents._definition_to_dict(definition=environment_agents)
@property
def network_agents(self):
for i in self.G.nodes():
node = self.G.nodes[i]
if 'agent' in node:
yield node['agent']
@network_agents.setter
def network_agents(self, network_agents):
self._network_agents = network_agents
for ix in self.G.nodes():
self.init_agent(ix, agent_definitions=network_agents)
def init_agent(self, agent_id, agent_definitions):
node = self.G.nodes[agent_id]
init = False
state = dict(node)
agent_type = None
if 'agent_type' in self.states.get(agent_id, {}):
agent_type = self.states[agent_id]['agent_type']
elif 'agent_type' in node:
agent_type = node['agent_type']
elif 'agent_type' in self.default_state:
agent_type = self.default_state['agent_type']
if agent_type:
agent_type = agents.deserialize_type(agent_type)
elif agent_definitions:
agent_type, state = agents._agent_from_definition(agent_definitions, unique_id=agent_id)
else:
serialization.logger.debug('Skipping node {}'.format(agent_id))
return
return self.set_agent(agent_id, agent_type, state)
def set_agent(self, agent_id, agent_type, state=None):
node = self.G.nodes[agent_id]
defstate = deepcopy(self.default_state) or {}
defstate.update(self.states.get(agent_id, {}))
defstate.update(node.get('state', {}))
if state:
defstate.update(state)
a = None
if agent_type:
state = defstate
a = agent_type(model=self,
unique_id=agent_id
)
for (k, v) in state.items():
setattr(a, k, v)
node['agent'] = a
self.schedule.add(a)
return a
def add_node(self, agent_type, state=None):
agent_id = int(len(self.G.nodes()))
self.G.add_node(agent_id)
a = self.set_agent(agent_id, agent_type, state)
a['visible'] = True
return a
def add_edge(self, agent1, agent2, start=None, **attrs):
if hasattr(agent1, 'id'):
agent1 = agent1.id
if hasattr(agent2, 'id'):
agent2 = agent2.id
start = start or self.now
return self.G.add_edge(agent1, agent2, **attrs)
def log(self, message, *args, level=logging.INFO, **kwargs):
if not self.logger.isEnabledFor(level):
return
message = message + " ".join(str(i) for i in args)
message = " @{:>3}: {}".format(self.now, message)
for k, v in kwargs:
message += " {k}={v} ".format(k, v)
extra = {}
extra['now'] = self.now
extra['unique_id'] = self.name
return self.logger.log(level, message, extra=extra)
def step(self):
'''
Advance one step in the simulation, and update the data collection and scheduler appropriately
'''
super().step()
self.schedule.step()
def run(self, until, *args, **kwargs):
until = until or float('inf')
while self.schedule.next_time < until:
self.step()
utils.logger.debug(f'Simulation step {self.schedule.time}/{until}. Next: {self.schedule.next_time}')
self.schedule.time = until
self._history.flush_cache()
def _save_state(self, now=None):
serialization.logger.debug('Saving state @{}'.format(self.now))
self._history.save_records(self.state_to_tuples(now=now))
def __getitem__(self, key):
if isinstance(key, tuple):
self._history.flush_cache()
return self._history[key]
return self.environment_params[key]
def __setitem__(self, key, value):
if isinstance(key, tuple):
k = Key(*key)
self._history.save_record(*k,
value=value)
return
self.environment_params[key] = value
self._history.save_record(dict_id='env',
t_step=self.now,
key=key,
value=value)
def __contains__(self, key):
return key in self.environment_params
def get(self, key, default=None):
'''
Get the value of an environment attribute.
Return `default` if the value is not set.
'''
return self.environment_params.get(key, default)
def __getitem__(self, key):
return self.environment_params.get(key)
def __setitem__(self, key, value):
return self.environment_params.__setitem__(key, value)
def get_agent(self, agent_id):
return self.G.nodes[agent_id]['agent']
def get_agents(self, nodes=None):
if nodes is None:
return self.agents
return (self.G.nodes[i]['agent'] for i in nodes)
def _agent_to_tuples(self, agent, now=None):
if now is None:
now = self.now
for k, v in agent.state.items():
yield Record(dict_id=agent.id,
t_step=now,
key=k,
value=v)
def state_to_tuples(self, agent_id=None, now=None):
if now is None:
now = self.now
if agent_id:
agent = self.get_agent(agent_id)
yield from self._agent_to_tuples(agent, now)
return
for k, v in self.environment_params.items():
yield Record(dict_id='env',
t_step=now,
key=k,
value=v)
for agent in self.agents:
yield from self._agent_to_tuples(agent, now)
def __getstate__(self):
state = {}
for prop in _CONFIG_PROPS:
state[prop] = self.__dict__[prop]
state['G'] = json_graph.node_link_data(self.G)
state['environment_agents'] = self._env_agents
state['schedule'] = self.schedule
return state
def __setstate__(self, state):
for prop in _CONFIG_PROPS:
self.__dict__[prop] = state[prop]
self._env_agents = state['environment_agents']
self.G = json_graph.node_link_graph(state['G'])
# self._env = None
self.schedule = state['schedule']
self._queue = []
SoilEnvironment = Environment