Refactored time

Treating time and conditions as the same entity was getting confusing, and it
added a lot of unnecessary abstraction in a critical part (the scheduler).

The scheduling queue now has the time as a floating number (faster), the agent
id (for ties) and the condition, as well as the agent. The first three
elements (time, id, condition) can be considered as the "key" for the event.

To allow for agent execution to be "randomized" within every step, a new
parameter has been added to the scheduler, which makes it add a random number to
the key in order to change the ordering.

`EventedAgent.received` now checks the messages before returning control to the
user by default.

examples/events_and_messages/cars.py

@@ -127,7 +127,8 @@ class Driver(Evented, FSM):
                 )
 
             self.check_passengers()
-            self.check_messages()  # This will call on_receive behind the scenes, and the agent's status will be updated
+            # This will call on_receive behind the scenes, and the agent's status will be updated
+            self.check_messages()  
             yield Delta(30)  # Wait at least 30 seconds before checking again
 
         try:
@@ -204,6 +205,8 @@ class Passenger(Evented, FSM):
         while not self.journey:
             self.info(f"Passenger at: { self.pos }. Checking for responses.")
             try:
+                # This will call check_messages behind the scenes, and the agent's status will be updated
+                # If you want to avoid that, you can call it with: check=False
                 yield self.received(expiration=expiration)
             except events.TimedOut:
                 self.info(f"Passenger at: { self.pos }. Asking for journey.")
@@ -211,7 +214,6 @@ class Passenger(Evented, FSM):
                     journey, ttl=timeout, sender=self, agent_class=Driver
                 )
                 expiration = self.now + timeout
-            self.check_messages()
         return self.driving_home
 
     @state
@@ -220,7 +222,11 @@ class Passenger(Evented, FSM):
             self.pos[0] != self.journey.destination[0]
             or self.pos[1] != self.journey.destination[1]
         ):
+            try:
                 yield self.received(timeout=60)
+            except events.TimedOut:
+                pass
+
         self.info("Got home safe!")
         self.die()
 

examples/rabbits/basic/rabbit_agents.py

@@ -133,7 +133,7 @@ class RandomAccident(BaseAgent):
             math.log10(max(1, rabbits_alive))
         )
         self.debug("Killing some rabbits with prob={}!".format(prob_death))
-        for i in self.iter_agents(agent_class=Rabbit):
+        for i in self.get_agents(agent_class=Rabbit):
             if i.state_id == i.dead.id:
                 continue
             if self.prob(prob_death):

soil/agents/__init__.py

@@ -20,12 +20,6 @@ from typing import Dict, List
 from .. import serialization, utils, time, config
 
 
-def as_node(agent):
-    if isinstance(agent, BaseAgent):
-        return agent.id
-    return agent
-
-
 IGNORED_FIELDS = ("model", "logger")
 
 
@@ -97,10 +91,6 @@ class BaseAgent(MesaAgent, MutableMapping, metaclass=MetaAgent):
     """
 
     def __init__(self, unique_id, model, name=None, interval=None, **kwargs):
-        # Check for REQUIRED arguments
-        # Initialize agent parameters
-        if isinstance(unique_id, MesaAgent):
-            raise Exception()
         assert isinstance(unique_id, int)
         super().__init__(unique_id=unique_id, model=model)
 
@@ -207,7 +197,8 @@ class BaseAgent(MesaAgent, MutableMapping, metaclass=MetaAgent):
     def step(self):
         if not self.alive:
             raise time.DeadAgent(self.unique_id)
-        return super().step() or time.Delta(self.interval)
+        super().step() 
+        return time.Delta(self.interval)
 
     def log(self, message, *args, level=logging.INFO, **kwargs):
         if not self.logger.isEnabledFor(level):
@@ -270,6 +261,7 @@ def prob(prob, random):
     return r < prob
 
 
+
 def calculate_distribution(network_agents=None, agent_class=None):
     """
     Calculate the threshold values (thresholds for a uniform distribution)
@@ -414,7 +406,7 @@ def filter_agents(
     if ids:
         f = (agents[aid] for aid in ids if aid in agents)
     else:
-        f = (a for a in agents.values())
+        f = agents.values()
 
     if state_id is not None and not isinstance(state_id, (tuple, list)):
         state_id = tuple([state_id])
@@ -638,6 +630,10 @@ from .SentimentCorrelationModel import *
 from .SISaModel import *
 from .CounterModel import *
 
+
+class Agent(NetworkAgent, EventedAgent):
+    '''Default agent class, has both network and event capabilities'''
+
 try:
     import scipy
     from .Geo import Geo

soil/agents/evented.py

@@ -1,57 +1,74 @@
 from . import BaseAgent
-from ..events import Message, Tell, Ask, Reply, TimedOut
+from ..events import Message, Tell, Ask, TimedOut
-from ..time import Cond
+from ..time import BaseCond
 from functools import partial
 from collections import deque
 
 
-class Evented(BaseAgent):
+class ReceivedOrTimeout(BaseCond):
+    def __init__(self, agent, expiration=None, timeout=None, check=True, ignore=False, **kwargs):
+        if expiration is None:
+            if timeout is not None:
+                expiration = agent.now + timeout
+        self.expiration = expiration
+        self.ignore = ignore
+        self.check = check
+        super().__init__(**kwargs)
+
+    def expired(self, time):
+        return self.expiration and self.expiration < time
+
+    def ready(self, agent, time):
+        return len(agent._inbox) or self.expired(time)
+
+    def return_value(self, agent):
+        if not self.ignore and self.expired(agent.now):
+            raise TimedOut('No messages received')
+        if self.check:
+            agent.check_messages()
+        return None
+
+    def schedule_next(self, time, delta, first=False):
+        if self._delta is not None:
+            delta = self._delta
+        return (time + delta, self)
+
+    def __repr__(self):
+        return f'ReceivedOrTimeout(expires={self.expiration})'
+
+
+class EventedAgent(BaseAgent):
     def __init__(self, *args, **kwargs):
         super().__init__(*args, **kwargs)
         self._inbox = deque()
-        self._received = 0
         self._processed = 0
 
-
     def on_receive(self, *args, **kwargs):
         pass
 
-    def received(self, expiration=None, timeout=None):
+    def received(self, *args, **kwargs):
-        current = self._received
+        return ReceivedOrTimeout(self, *args, **kwargs)
-        if expiration is None:
-            expiration = float('inf') if timeout is None else self.now + timeout
 
-        if expiration < self.now:
+    def tell(self, msg, sender=None):
-            raise ValueError("Invalid expiration time")
+        self._inbox.append(Tell(timestamp=self.now, payload=msg, sender=sender))
-
-        def ready(agent):
-            return agent._received > current or agent.now >= expiration
-
-        def value(agent):
-            if agent.now > expiration:
-                raise TimedOut("No message received")
-
-        c = Cond(func=ready, return_func=value)
-        c._checked = True
-        return c
-
-    def tell(self, msg, sender):
-        self._received += 1
-        self._inbox.append(Tell(payload=msg, sender=sender))
 
     def ask(self, msg, timeout=None):
-        self._received += 1
+        ask = Ask(timestamp=self.now, payload=msg)
-        ask = Ask(payload=msg)
         self._inbox.append(ask)
         expiration = float('inf') if timeout is None else self.now + timeout
         return ask.replied(expiration=expiration)
 
     def check_messages(self):
+        changed = False
         while self._inbox:
             msg = self._inbox.popleft()
             self._processed += 1
             if msg.expired(self.now):
                 continue
+            changed = True
             reply = self.on_receive(msg.payload, sender=msg.sender)
             if isinstance(msg, Ask):
                 msg.reply = reply
+        return changed
+
+Evented = EventedAgent

soil/agents/network_agents.py

@@ -54,7 +54,7 @@ class NetworkAgent(BaseAgent):
         return G
 
     def remove_node(self):
-        print(f"Removing node for {self.unique_id}: {self.node_id}")
+        self.debug(f"Removing node for {self.unique_id}: {self.node_id}")
         self.G.remove_node(self.node_id)
         self.node_id = None
 
@@ -80,3 +80,5 @@ class NetworkAgent(BaseAgent):
         if remove:
             self.remove_node()
         return super().die()
+
+NetAgent = NetworkAgent

soil/environment.py

@@ -310,17 +310,20 @@ class NetworkEnvironment(BaseEnvironment):
             self.add_agent(node_id=node_id, agent_class=a_class, **agent_params)
 
 
-Environment = NetworkEnvironment
+class EventedEnvironment(BaseEnvironment):
-
+    def broadcast(self, msg,  sender=None, expiration=None, ttl=None, **kwargs):
-
-class EventedEnvironment(Environment):
-    def broadcast(self, msg,  sender, expiration=None, ttl=None, **kwargs):
         for agent in self.agents(**kwargs):
+            if agent == sender:
+                continue
             self.logger.info(f'Telling {repr(agent)}: {msg} ttl={ttl}')
             try:
                 inbox = agent._inbox
             except AttributeError:
                 self.logger.info(f'Agent {agent.unique_id} cannot receive events because it does not have an inbox')
                 continue
+            # Allow for AttributeError exceptions in this part of the code
             inbox.append(events.Tell(payload=msg, sender=sender, expiration=expiration if ttl is None else self.now+ttl))
 
+
+class Environment(NetworkEnvironment, EventedEnvironment):
+    '''Default environment class, has both network and event capabilities'''

soil/events.py

@@ -1,4 +1,4 @@
-from .time import Cond
+from .time import BaseCond
 from dataclasses import dataclass, field
 from typing import Any
 from uuid import uuid4
@@ -11,6 +11,7 @@ class Message:
     payload: Any
     sender: Any = None
     expiration: float = None
+    timestamp: float = None
     id: int = field(default_factory=uuid4)
 
     def expired(self, when):
@@ -20,19 +21,28 @@ class Reply(Message):
     source: Message
 
 
+class ReplyCond(BaseCond):
+    def __init__(self, ask, *args, **kwargs):
+        self._ask = ask
+        super().__init__(*args, **kwargs)
+
+    def ready(self, agent, time):
+        return self._ask.reply is not None or self._ask.expired(time)
+
+    def return_value(self, agent):
+        if self._ask.expired(agent.now):
+            raise TimedOut()
+        return self._ask.reply
+
+    def __repr__(self):
+        return f"ReplyCond({self._ask.id})"
+
+
 class Ask(Message):
     reply: Message = None
 
     def replied(self, expiration=None):
-        def ready(agent):
+        return ReplyCond(self)
-            return self.reply is not None or agent.now > expiration
-
-        def value(agent):
-            if agent.now > expiration:
-                raise TimedOut(f'No answer received for {self}')
-            return self.reply
-
-        return Cond(func=ready, return_func=value)
 
 
 class Tell(Message):

soil/network.py

@@ -59,7 +59,6 @@ def find_unassigned(G, shuffle=False, random=random):
 
     If node_id is None, a node without an agent_id will be found.
     """
-    # TODO: test
     candidates = list(G.nodes(data=True))
     if shuffle:
         random.shuffle(candidates)

soil/serialization.py

@@ -221,8 +221,6 @@ def deserialize(type_, value=None, globs=None, **kwargs):
 
 def deserialize_all(names, *args, known_modules=KNOWN_MODULES, **kwargs):
     """Return the list of deserialized objects"""
-    # TODO: remove
-    print("SERIALIZATION", kwargs)
     objects = []
     for name in names:
         mod = deserialize(name, known_modules=known_modules)

soil/simulation.py

@@ -66,7 +66,7 @@ class Simulation:
         if ignored:
             d.setdefault("extra", {}).update(ignored)
         if ignored:
-            print(f'Warning: Ignoring these parameters (added to "extra"): { ignored }')
+            logger.warning(f'Ignoring these parameters (added to "extra"): { ignored }')
         d.update(kwargs)
 
         return cls(**d)

soil/time.py

@@ -1,10 +1,11 @@
 from mesa.time import BaseScheduler
 from queue import Empty
-from heapq import heappush, heappop, heapify
+from heapq import heappush, heappop
 import math
 
 from inspect import getsource
 from numbers import Number
+from textwrap import dedent
 
 from .utils import logger
 from mesa import Agent as MesaAgent
@@ -23,65 +24,11 @@ class When:
             return time
         self._time = time
 
-    def next(self, time):
+    def abs(self, time):
         return self._time
 
-    def abs(self, time):
+    def schedule_next(self, time, delta, first=False):
-        return self
+        return (self._time, None)
-
-    def __repr__(self):
-        return str(f"When({self._time})")
-
-    def __lt__(self, other):
-        if isinstance(other, Number):
-            return self._time < other
-        return self._time < other.next(self._time)
-
-    def __gt__(self, other):
-        if isinstance(other, Number):
-            return self._time > other
-        return self._time > other.next(self._time)
-
-    def ready(self, agent):
-        return self._time <= agent.model.schedule.time
-
-    def return_value(self, agent):
-        return None
-
-
-class Cond(When):
-    def __init__(self, func, delta=1, return_func=lambda agent: None):
-        self._func = func
-        self._delta = delta
-        self._checked = False
-        self._return_func = return_func
-
-    def next(self, time):
-        if self._checked:
-            return time + self._delta
-        return time
-
-    def abs(self, time):
-        return self
-
-    def ready(self, agent):
-        self._checked = True
-        return self._func(agent)
-
-    def return_value(self, agent):
-        return self._return_func(agent)
-
-    def __eq__(self, other):
-        return False
-
-    def __lt__(self, other):
-        return True
-
-    def __gt__(self, other):
-        return False
-
-    def __repr__(self):
-        return str(f'Cond("{getsource(self._func)}")')
 
 
 NEVER = When(INFINITY)
@@ -91,48 +38,94 @@ class Delta(When):
     def __init__(self, delta):
         self._delta = delta
 
+    def abs(self, time):
+        return self._time + self._delta
+
     def __eq__(self, other):
         if isinstance(other, Delta):
             return self._delta == other._delta
         return False
 
-    def abs(self, time):
+    def schedule_next(self, time, delta, first=False):
-        return When(self._delta + time)
+        return (time + self._delta, None)
-
-    def next(self, time):
-        return time + self._delta
 
     def __repr__(self):
         return str(f"Delta({self._delta})")
 
 
+class BaseCond:
+    def __init__(self, msg=None, delta=None, eager=False):
+        self._msg = msg
+        self._delta = delta
+        self.eager = eager
+
+    def schedule_next(self, time, delta, first=False):
+        if first and self.eager:
+            return (time, self)
+        if self._delta:
+            delta = self._delta
+        return (time + delta, self)
+
+    def return_value(self, agent):
+        return None
+
+    def __repr__(self):
+        return self._msg or self.__class__.__name__
+
+
+class Cond(BaseCond):
+    def __init__(self, func, *args, **kwargs):
+        self._func = func
+        super().__init__(*args, **kwargs)
+
+    def ready(self, agent, time):
+        return self._func(agent)
+
+    def __repr__(self):
+        if self._msg:
+            return self._msg
+        return str(f'Cond("{dedent(getsource(self._func)).strip()}")')
+
+
 class TimedActivation(BaseScheduler):
     """A scheduler which activates each agent when the agent requests.
     In each activation, each agent will update its 'next_time'.
     """
 
-    def __init__(self, *args, **kwargs):
+    def __init__(self, *args, shuffle=True, **kwargs):
         super().__init__(*args, **kwargs)
         self._next = {}
         self._queue = []
-        self.next_time = 0
+        self._shuffle = shuffle
+        self.step_interval = 1
         self.logger = logger.getChild(f"time_{ self.model }")
 
     def add(self, agent: MesaAgent, when=None):
         if when is None:
-            when = When(self.time)
+            when = self.time
-        elif not isinstance(when, When):
+        elif isinstance(when, When):
-            when = When(when)
+            when = when.abs()
-        if agent.unique_id in self._agents:
-            del self._agents[agent.unique_id]
-            if agent.unique_id in self._next:
-                self._queue.remove((self._next[agent.unique_id], agent))
-                heapify(self._queue)
             
-        self._next[agent.unique_id] = when
+        self._schedule(agent, None, when)
-        heappush(self._queue, (when, agent))
         super().add(agent)
 
+    def _schedule(self, agent, condition=None, when=None):
+        if condition:
+            if not when:
+                when, condition = condition.schedule_next(when or self.time,
+                                                          self.step_interval)
+        else:
+            if when is None:
+                when = self.time + self.step_interval
+            condition = None
+        if self._shuffle:
+            key = (when, self.model.random.random(), condition)
+        else:
+            key = (when, agent.unique_id, condition)
+        self._next[agent.unique_id] = key
+        heappush(self._queue, (key, agent))
+
+
     def step(self) -> None:
         """
         Executes agents in order, one at a time. After each step,
@@ -143,73 +136,59 @@ class TimedActivation(BaseScheduler):
         if not self.model.running:
             return
 
-        when = NEVER
-
-        to_process = []
-        skipped = []
-        next_time = INFINITY
-
-        ix = 0
-
         self.logger.debug(f"Queue length: {len(self._queue)}")
 
         while self._queue:
-            (when, agent) = self._queue[0]
+            ((when, _id, cond), agent) = self._queue[0]
             if when > self.time:
                 break
+
             heappop(self._queue)
-            if when.ready(agent):
+            if cond:
+                if not cond.ready(agent, self.time):
+                    self._schedule(agent, cond)
+                    continue
                 try:
-                    agent._last_return = when.return_value(agent)
+                    agent._last_return = cond.return_value(agent)
                 except Exception as ex:
                     agent._last_except = ex
+            else:
+                agent._last_return = None
+                agent._last_except = None
 
-                self._next.pop(agent.unique_id, None)
-                to_process.append(agent)
-                continue
-
-            next_time = min(next_time, when.next(self.time))
-            self._next[agent.unique_id] = next_time
-            skipped.append((when, agent))
-
-        if self._queue:
-            next_time = min(next_time, self._queue[0][0].next(self.time))
-
-        self._queue = [*skipped, *self._queue]
-
-        for agent in to_process:
             self.logger.debug(f"Stepping agent {agent}")
+            self._next.pop(agent.unique_id, None)
 
             try:
-                returned = ((agent.step() or Delta(1))).abs(self.time)
+                returned = agent.step()
             except DeadAgent:
-                if agent.unique_id in self._next:
-                    del self._next[agent.unique_id]
                 agent.alive = False
                 continue
 
+            # Check status for MESA agents
             if not getattr(agent, "alive", True):
                 continue
 
-            value = returned.next(self.time)
+            if returned:
-            agent._last_return = value
+                next_check = returned.schedule_next(self.time, self.step_interval, first=True)
-
+                self._schedule(agent, when=next_check[0], condition=next_check[1])
-            if value < self.time:
-                raise Exception(
-                    f"Cannot schedule an agent for a time in the past ({when} < {self.time})"
-                )
-            if value < INFINITY:
-                next_time = min(value, next_time)
-
-                self._next[agent.unique_id] = returned
-                heappush(self._queue, (returned, agent))
             else:
-                assert not self._next[agent.unique_id]
+                next_check = (self.time + self.step_interval, None)
+
+                self._schedule(agent)
 
         self.steps += 1
-        self.logger.debug(f"Updating time step: {self.time} -> {next_time}")
-        self.time = next_time
 
-        if not self._queue or next_time == INFINITY:
+        if not self._queue:
+            self.time = INFINITY
             self.model.running = False
             return self.time
+
+        next_time = self._queue[0][0][0]
+        if next_time < self.time:
+            raise Exception(
+                f"An agent has been scheduled for a time in the past, there is probably an error ({when} < {self.time})"
+            )
+        self.logger.debug(f"Updating time step: {self.time} -> {next_time}")
+
+        self.time = next_time

tests/test_agents.py

@@ -12,12 +12,11 @@ class Dead(agents.FSM):
         return self.die()
 
 
-class TestMain(TestCase):
+class TestAgents(TestCase):
     def test_die_returns_infinity(self):
         '''The last step of a dead agent should return time.INFINITY'''
         d = Dead(unique_id=0, model=environment.Environment())
-        ret = d.step().abs(0)
+        ret = d.step()
-        print(ret, "next")
         assert ret == stime.NEVER
 
     def test_die_raises_exception(self):
@@ -66,4 +65,95 @@ class TestMain(TestCase):
         a.step()
         assert a.run == 1
         a.step()
-        assert a.run == 2
+
+
+    def test_broadcast(self):
+        '''
+        An agent should be able to broadcast messages to every other agent, AND each receiver should be able
+        to process it
+        '''
+        class BCast(agents.Evented):
+            pings_received = 0
+
+            def step(self):
+                print(self.model.broadcast)
+                try:
+                    self.model.broadcast('PING')
+                except Exception as ex:
+                    print(ex)
+                while True:
+                    self.check_messages()
+                    yield
+
+            def on_receive(self, msg, sender=None):
+                self.pings_received += 1
+        
+        e = environment.EventedEnvironment()
+
+        for i in range(10):
+            e.add_agent(agent_class=BCast)
+        e.step()
+        pings_received = lambda: [a.pings_received for a in e.agents]
+        assert sorted(pings_received()) == list(range(1, 11))
+        e.step()
+        assert all(x==10 for x in pings_received())
+
+    def test_ask_messages(self):
+        '''
+        An agent should be able to ask another agent, and wait for a response.
+        '''
+
+        # #Results depend on ordering (agents are shuffled), so force the first agent
+        pings = []
+        pongs = []
+        responses = []
+
+        class Ping(agents.EventedAgent):
+            def step(self):
+                target_id = (self.unique_id + 1) % self.count_agents()
+                target = self.model.agents[target_id]
+                print('starting')
+                while True:
+                    print('Pings: ', pings, responses or not pings, self.model.schedule._queue)
+                    if pongs or not pings:
+                        pings.append(self.now)
+                        response = yield target.ask('PING')
+                        responses.append(response)
+                    else:
+                        print('NOT sending ping')
+                    print('Checking msgs')
+                    # Do not advance until we have received a message.
+                    # warning: it will wait at least until the next time in the simulation
+                    yield self.received(check=True)
+                print('done')
+
+            def on_receive(self, msg, sender=None):
+                if msg == 'PING':
+                    pongs.append(self.now)
+                    return 'PONG'
+
+        e = environment.EventedEnvironment()
+        for i in range(2):
+            e.add_agent(agent_class=Ping)
+        assert e.now == 0
+
+        # There should be a delay of one step between agent 0 and 1
+        # On the first step:
+        #   Agent 0 sends a PING, but blocks before a PONG
+        #   Agent 1 sends a PONG, and blocks after its PING
+        # After that step, every agent can both receive (there are pending messages) and then send.
+
+        e.step()
+        assert e.now == 1
+        assert pings == [0]
+        assert pongs == []
+
+        e.step()
+        assert e.now == 2
+        assert pings == [0, 1]
+        assert pongs == [1]
+
+        e.step()
+        assert e.now == 3
+        assert pings == [0, 1, 2]
+        assert pongs == [1, 2]

tests/test_examples.py

@@ -44,6 +44,8 @@ def add_example_tests():
     for cfg, path in serialization.load_files(
         join(EXAMPLES, "**", "*.yml"),
     ):
+        if 'soil_output' in path:
+            continue
         p = make_example_test(path=path, cfg=config.Config.from_raw(cfg))
         fname = os.path.basename(path)
         p.__name__ = "test_example_file_%s" % fname

tests/test_main.py

@@ -172,25 +172,21 @@ class TestMain(TestCase):
         assert len(configs) > 0
 
     def test_until(self):
-        config = {
+        n_runs = 0
-            "name": "until_sim",
+
-            "model_params": {
+        class CheckRun(agents.BaseAgent):
-                "network_params": {},
+            def step(self):
-                "agents": {
+                nonlocal n_runs
-                    "fixed": [
+                n_runs += 1
-                        {
+                return super().step()
-                            "agent_class": agents.BaseAgent,
+
-                        }
+        n_trials = 50
-                    ]
+        max_time = 2
-                },
+        s = simulation.Simulation(model_params={'agents': [{'agent_class': CheckRun}]},
-            },
+                                  num_trials=n_trials, max_time=max_time)
-            "max_time": 2,
-            "num_trials": 50,
-        }
-        s = simulation.from_config(config)
         runs = list(s.run_simulation(dry_run=True))
         over = list(x.now for x in runs if x.now > 2)
-        assert len(runs) == config["num_trials"]
+        assert len(runs) == n_trials
         assert len(over) == 0
 
     def test_fsm(self):

tests/test_network.py

@@ -72,7 +72,7 @@ class TestNetwork(TestCase):
         assert len(env.agents) == 2
         assert env.agents[1].count_agents(state_id="normal") == 2
         assert env.agents[1].count_agents(state_id="normal", limit_neighbors=True) == 1
-        assert env.agents[0].neighbors == 1
+        assert env.agents[0].count_neighbors() == 1
 
     def test_custom_agent_neighbors(self):
         """Allow for search of neighbors with a certain state_id"""
@@ -90,7 +90,7 @@ class TestNetwork(TestCase):
         env = s.run_simulation(dry_run=True)[0]
         assert env.agents[1].count_agents(state_id="normal") == 2
         assert env.agents[1].count_agents(state_id="normal", limit_neighbors=True) == 1
-        assert env.agents[0].neighbors == 1
+        assert env.agents[0].count_neighbors() == 1
 
     def test_subgraph(self):
         """An agent should be able to subgraph the global topology"""

tests/test_time.py

@@ -30,8 +30,9 @@ class TestMain(TestCase):
 
         times_started = []
         times_awakened = []
+        times_asleep = []
         times = []
-        done = 0
+        done = []
 
         class CondAgent(agents.BaseAgent):
 
@@ -39,36 +40,38 @@ class TestMain(TestCase):
                 nonlocal done
                 times_started.append(self.now)
                 while True:
-                    yield time.Cond(lambda agent: agent.model.schedule.time >= 10)
+                    times_asleep.append(self.now)
+                    yield time.Cond(lambda agent: agent.now >= 10,
+                                    delta=2)
                     times_awakened.append(self.now)
                     if self.now >= 10:
                         break
-                done += 1
+                done.append(self.now)
 
         env = environment.Environment(agents=[{'agent_class': CondAgent}])
 
 
         while env.schedule.time < 11:
-            env.step()
             times.append(env.now)
+            env.step()
+
         assert env.schedule.time == 11
         assert times_started == [0]
         assert times_awakened == [10]
-        assert done == 1
+        assert done == [10]
         # The first time will produce the Cond.
-        # Since there are no other agents, time will not advance, but the number
+        assert env.schedule.steps == 6
-        # of steps will.
+        assert len(times) == 6
-        assert env.schedule.steps == 12
-        assert len(times) == 12
 
-        while env.schedule.time < 12:
+        while env.schedule.time < 13:
-            env.step()
             times.append(env.now)
+            env.step()
 
-        assert env.schedule.time == 12
+        assert times == [0, 2, 4, 6, 8, 10, 11]
+        assert env.schedule.time == 13
         assert times_started == [0, 11]
-        assert times_awakened == [10, 11]
+        assert times_awakened == [10]
-        assert done == 2
+        assert done == [10]
         # Once more to yield the cond, another one to continue
-        assert env.schedule.steps == 14
+        assert env.schedule.steps == 7
-        assert len(times) == 14
+        assert len(times) == 7