mirror of https://github.com/gsi-upm/soil
Python Server
Tasio Mendez
7 years ago
commit
6f8cc9ba50
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__pycache__/
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output/
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name: ControlModelM2_sim
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max_time: 50
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num_trials: 2
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network_params:
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generator: barabasi_albert_graph
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n: 100
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m: 2
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network_agents:
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- agent_type: ControlModelM2
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weight: 0.1
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state:
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id: 1
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- agent_type: ControlModelM2
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weight: 0.9
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state:
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id: 0
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environment_params:
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prob_neutral_making_denier: 0.035
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prob_infect: 0.075
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prob_cured_healing_infected: 0.035
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prob_cured_vaccinate_neutral: 0.035
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prob_vaccinated_healing_infected: 0.035
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prob_vaccinated_vaccinate_neutral: 0.035
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prob_generate_anti_rumor: 0.035
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standard_variance: 0.055
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from server import ModularServer
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from visualization import GraphVisualization, Model
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def run(model, params=None):
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graphVisualization = GraphVisualization(params)
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server = ModularServer(model, graphVisualization, name="SOIL Model")
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server.port = 8001
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server.launch()
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if __name__ == "__main__":
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soil = Model(dump=False)
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run(soil)
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import os
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import tornado.ioloop
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import tornado.web
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import tornado.websocket
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import tornado.escape
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import tornado.gen
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import webbrowser
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import yaml
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import logging
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logger = logging.getLogger(__name__)
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logger.setLevel(logging.INFO)
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class VisualizationElement:
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"""
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Defines an element of the visualization.
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Attributes:
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package_includes: A list of external JavaScript files to include that
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are part of the packages.
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local_includes: A list of JavaScript files that are local to the
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directory that the server is being run in.
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js_code: A JavaScript code string to instantiate the element.
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Methods:
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render: Takes a model object, and produces JSON data which can be sent
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to the client.
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"""
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package_includes = []
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local_includes = []
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js_code = ''
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render_args = {}
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def __init__(self):
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pass
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def render(self, model):
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return '<b>VisualizationElement goes here</b>.'
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class PageHandler(tornado.web.RequestHandler):
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""" Handler for the HTML template which holds the visualization. """
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def get(self):
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self.render('index.html', port=self.application.port,
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model_name=self.application.model_name,
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package_includes=self.application.package_includes,
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local_includes=self.application.local_includes,
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scripts=self.application.js_code)
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class SocketHandler(tornado.websocket.WebSocketHandler):
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def open(self):
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if self.application.verbose:
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logger.info('Socket opened!')
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def check_origin(self, origin):
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return True
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def on_message(self, message):
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""" Receiving a message from the websocket, parse, and act accordingly. """
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msg = tornado.escape.json_decode(message)
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if msg['type'] == 'config_file':
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if self.application.verbose:
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print(msg['data'])
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config = list(yaml.load_all(msg['data']))
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if len(config) > 1:
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error = 'Please, provide only one configuration.'
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if self.application.verbose:
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logger.error(error)
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self.write_message({'type': 'error',
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'error': error})
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return
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else:
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config = config[0]
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self.name = config['name']
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self.application.model.run(config)
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trials = []
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for i in range(config['num_trials']):
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trials.append('{}_trial_{}'.format(self.name, i))
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self.write_message({'type': 'trials',
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'data': trials })
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elif msg['type'] == 'get_trial':
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if self.application.verbose:
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logger.info('Trial {} requested!'.format(msg['data']))
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self.write_message({'type': 'get_trial',
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'data': self.application.model.get_trial(self.name, msg['data']) })
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else:
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if self.application.verbose:
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logger.info('Unexpected message!')
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class ModularServer(tornado.web.Application):
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""" Main visualization application. """
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portrayal_method = None
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port = 8001
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model_args = ()
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model_kwargs = {}
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page_handler = (r'/', PageHandler)
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socket_handler = (r'/ws', SocketHandler)
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static_handler = (r'/(.*)', tornado.web.StaticFileHandler,
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# {'path': os.path.dirname(__file__)})
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{'path': 'templates'})
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local_handler = (r'/local/(.*)', tornado.web.StaticFileHandler,
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{'path': ''})
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handlers = [page_handler, socket_handler, static_handler, local_handler]
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settings = {'debug': True,
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'template_path': os.path.dirname(__file__) + '/templates'}
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def __init__(self, model, visualization_element, name='SOIL Model', verbose=True,
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*args, **kwargs):
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self.verbose = verbose
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self.package_includes = set()
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self.local_includes = set()
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self.js_code = []
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self.visualization_element = visualization_element
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self.model_name = name
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self.model = model
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self.model_args = args
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self.model_kwargs = kwargs
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#self.reset_model()
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# Initializing the application itself:
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super().__init__(self.handlers, **self.settings)
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'''
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def reset_model(self):
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self.model = self.model_cls(*self.model_args, **self.model_kwargs)
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'''
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def render_model(self):
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return self.visualization_element.render(self.model)
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def launch(self, port=None):
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""" Run the app. """
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if port is not None:
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self.port = port
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url = 'http://127.0.0.1:{PORT}'.format(PORT=self.port)
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print('Interface starting at {url}'.format(url=url))
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self.listen(self.port)
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webbrowser.open(url)
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tornado.ioloop.IOLoop.instance().start()
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@ -0,0 +1,238 @@
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.node {
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stroke: #fff;
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stroke-width: 1.5px;
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}
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.link {
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stroke: #999;
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stroke-opacity: .6;
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}
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svg#graph, #configuration {
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background-color: white;
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margin-top: 15px;
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border-style: double;
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border-color: rgba(0, 0, 0, 0.35);
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border-radius: 5px;
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padding: 0px;
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}
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#timeline {
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padding: 0;
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margin-top: 20px;
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}
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#configuration {
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margin-top: 15px;
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padding: 15px;
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border-left: none !important;
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overflow: auto;
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}
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button {
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outline: none !important;
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}
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.btn-toolbar.controls {
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position: absolute;
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right: 0;
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}
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.controls > .btn {
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margin-left: 10px !important;
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}
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button.pressed {
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background-color: rgb(167, 242, 168);
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-webkit-animation: background 1s cubic-bezier(1,0,0,1) infinite;
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animation: background 1s cubic-bezier(1,0,0,1) infinite;
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cursor: default !important;
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}
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@-webkit-keyframes background {
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50% { background-color: #dddddd; }
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100% { background-color: rgb(167, 242, 168); }
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}
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@keyframes background {
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50% { background-color: #dddddd; }
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100% { background-color: rgb(167, 242, 168); }
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}
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#slider3 {
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background: repeating-linear-gradient( 90deg, white 27px, white 30px, #fff 32px, #aaa 33px );
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background-color: white;
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}
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.config-item {
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margin-top: 15px !important;
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}
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/** LOADER **/
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#load {
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position: absolute;
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font-weight: bold;
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}
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#load.loader {
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border: 5px solid #f3f3f3;
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border-radius: 50%;
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border-top: 5px solid #3498db;
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border-bottom: 5px solid #3498db;
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width: 30px;
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height: 30px;
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-webkit-animation: spin 1s linear infinite;
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animation: spin 1s linear infinite;
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position: absolute;
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}
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#load:before {
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content: 'No file'
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}
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#load.loader:before {
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content: '' !important;
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}
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@-webkit-keyframes spin {
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0% { -webkit-transform: rotate(0deg); }
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100% { -webkit-transform: rotate(360deg); }
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}
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@keyframes spin {
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0% { transform: rotate(0deg); }
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100% { transform: rotate(360deg); }
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}
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/** ALERT **/
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.alert-danger {
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position: absolute;
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margin-top: 20px;
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margin-left: 5px;
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}
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/** FILE BROWSER **/
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.custom-file {
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position: relative;
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display: inline-block;
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width: 100%;
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height: 35px;
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margin-bottom: 0;
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cursor: pointer;
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}
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.custom-file-input {
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min-width: 14rem;
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max-width: 100%;
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height: 35px;
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margin: 0;
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filter: alpha(opacity=0);
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opacity: 0;
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}
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.custom-file-control {
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position: absolute;
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top: 0;
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right: 0;
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left: 0;
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z-index: 5;
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height: 35px;
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padding: .5rem 1rem;
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line-height: 1.5;
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color: #464a4c;
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pointer-events: none;
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-webkit-user-select: none;
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-moz-user-select: none;
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-ms-user-select: none;
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user-select: none;
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background-color: #fff;
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border: 1px solid rgba(0,0,0,.15);
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border-radius: .25rem;
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}
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.custom-file-control::before {
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content: "Browse";
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position: absolute;
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top: -1px;
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right: -1px;
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bottom: -1px;
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z-index: 6;
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display: block;
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height: 35px;
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padding: .5rem 1rem;
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line-height: 1.5;
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color: #464a4c;
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background-color: #eceeef;
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border: 1px solid rgba(0,0,0,.15);
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border-radius: 0 .25rem .25rem 0;
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}
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.custom-file-control::after {
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content: attr(data-content);
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}
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/** TABLES **/
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#percentTable {
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height: 150px !important;
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width: 100% !important;
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}
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#percentTable tr {
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padding: 5px 2px;
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}
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hr {
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margin-top: 15px !important;
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margin-bottom: 15px !important;
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}
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#info-graph {
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width: 70% !important;
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}
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.logo {
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margin-top: -40px;
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position: absolute;
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right: 15px;
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}
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/** SLIDER **/
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.speed-slider,
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.link-distance-slider {
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padding: 0 10px !important;
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margin-top: 5px !important;
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width: 100% !important;
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}
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.speed-slider .slider,
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.link-distance-slider .slider {
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width: 100% !important;
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}
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.speed-slider .slider-selection,
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.link-distance-slider .slider-selection {
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background-image: linear-gradient(to bottom,
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rgba(36, 110, 162, 0.5) 0%,
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rgba(3, 169, 224, 0.5) 100%) !important;
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}
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.slider-disabled .slider-selection {
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opacity: 0.5;
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}
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.slider.slider-disabled .slider-track {
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cursor: default !important;
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}
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table#speed,
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table#link-distance {
|
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width: 100%;
|
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}
|
||||
|
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table#speed .min,
|
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table#speed .max,
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table#link-distance .min,
|
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table#link-distance .max {
|
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font-weight: normal !important;
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}
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@ -0,0 +1,72 @@
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#slider3 {
|
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margin: 0 0 10px 0;
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}
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|
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.d3-slider {
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position: relative;
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font-family: Verdana,Arial,sans-serif;
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font-size: 1.1em;
|
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border: 1px solid #aaaaaa;
|
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z-index: 2;
|
||||
}
|
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|
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.d3-slider-horizontal {
|
||||
height: 40px;
|
||||
}
|
||||
|
||||
.d3-slider-range {
|
||||
background:#2980b9;
|
||||
left:0px;
|
||||
right:0px;
|
||||
height: 0.8em;
|
||||
position: absolute;
|
||||
}
|
||||
|
||||
.d3-slider-handle {
|
||||
position: absolute;
|
||||
width: .8em;
|
||||
height: 48px;
|
||||
border: 1px solid #d3d3d3;
|
||||
border-radius: 4px;
|
||||
background: #eee;
|
||||
background: linear-gradient(to bottom, #eee 0%, #ddd 100%);
|
||||
z-index: 3;
|
||||
}
|
||||
|
||||
.d3-slider-handle:hover {
|
||||
border: 1px solid #999999;
|
||||
}
|
||||
|
||||
.d3-slider-horizontal .d3-slider-handle {
|
||||
top: -.3em;
|
||||
margin-left: -.4em;
|
||||
}
|
||||
|
||||
.d3-slider-axis {
|
||||
position: relative;
|
||||
z-index: 1;
|
||||
}
|
||||
|
||||
.d3-slider-axis-bottom {
|
||||
top: 38px;
|
||||
}
|
||||
|
||||
.d3-slider-axis-right {
|
||||
left: .8em;
|
||||
}
|
||||
|
||||
.d3-slider-axis path {
|
||||
stroke-width: 0;
|
||||
fill: none;
|
||||
}
|
||||
|
||||
.d3-slider-axis line {
|
||||
fill: none;
|
||||
stroke: #aaa;
|
||||
shape-rendering: crispEdges;
|
||||
stroke-dasharray: 2;
|
||||
}
|
||||
|
||||
.d3-slider-axis text {
|
||||
font-size: 11px;
|
||||
}
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@ -0,0 +1,140 @@
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||||
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
|
||||
<!-- Created with Inkscape (http://www.inkscape.org/) -->
|
||||
|
||||
<svg
|
||||
xmlns:dc="http://purl.org/dc/elements/1.1/"
|
||||
xmlns:cc="http://creativecommons.org/ns#"
|
||||
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
|
||||
xmlns:svg="http://www.w3.org/2000/svg"
|
||||
xmlns="http://www.w3.org/2000/svg"
|
||||
xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
|
||||
xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
|
||||
width="360"
|
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height="330"
|
||||
id="svg3752"
|
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version="1.1"
|
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inkscape:version="0.48.4 r9939"
|
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sodipodi:docname="logo_gsi_nuevo.svg"
|
||||
inkscape:export-filename="/home/cif/GoogleDrive/docs/gsi/corporativo/logos-fondos/logos/logo_gsi_nuevo_740_671.png"
|
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inkscape:export-xdpi="185.6273"
|
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inkscape:export-ydpi="185.6273">
|
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<defs
|
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id="defs3754">
|
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<inkscape:perspective
|
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sodipodi:type="inkscape:persp3d"
|
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inkscape:vp_x="0 : 526.18109 : 1"
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inkscape:vp_y="0 : 1000 : 0"
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inkscape:vp_z="744.09448 : 526.18109 : 1"
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|
||||
id="path3816" />
|
||||
<path
|
||||
d="m 633.2666,634.51772 c -3e-5,0.13672 -0.0411,0.25976 -0.12305,0.36914 -0.0684,0.10937 -0.20511,0.19824 -0.41015,0.2666 -0.19144,0.0684 -0.45121,0.12305 -0.7793,0.16406 -0.32816,0.041 -0.74515,0.0615 -1.25098,0.0615 -0.49221,0 -0.90237,-0.0205 -1.23046,-0.0615 -0.32816,-0.041 -0.58792,-0.0957 -0.7793,-0.16406 -0.19144,-0.0684 -0.32815,-0.15723 -0.41016,-0.2666 -0.0821,-0.10938 -0.12307,-0.23242 -0.12304,-0.36914 l 0,-21.59473 -0.041,0 -7.69043,21.57422 c -0.0547,0.17774 -0.14357,0.32813 -0.2666,0.45117 -0.12307,0.10938 -0.29397,0.19825 -0.5127,0.2666 -0.20509,0.0684 -0.4717,0.10938 -0.7998,0.12305 -0.32814,0.0273 -0.72463,0.041 -1.18945,0.041 -0.46487,0 -0.86135,-0.0205 -1.18946,-0.0615 -0.32814,-0.0273 -0.60158,-0.0752 -0.82031,-0.14355 -0.20509,-0.082 -0.36916,-0.17774 -0.49219,-0.28711 -0.12306,-0.10938 -0.20509,-0.23926 -0.24609,-0.38965 l -7.42383,-21.57422 -0.041,0 0,21.59473 c -1e-5,0.13672 -0.041,0.25976 -0.12305,0.36914 -0.0684,0.10937 -0.20509,0.19824 -0.41016,0.2666 -0.20508,0.0684 -0.47168,0.12305 -0.7998,0.16406 -0.31446,0.041 -0.72462,0.0615 -1.23047,0.0615 -0.49219,0 -0.90235,-0.0205 -1.23047,-0.0615 -0.32813,-0.041 -0.59473,-0.0957 -0.7998,-0.16406 -0.19141,-0.0684 -0.32813,-0.15723 -0.41016,-0.2666 -0.0684,-0.10938 -0.10254,-0.23242 -0.10254,-0.36914 l 0,-23.64551 c 0,-0.69724 0.18457,-1.23044 0.55371,-1.59961 0.36914,-0.36911 0.86133,-0.55368 1.47656,-0.55371 l 3.52735,0 c 0.62889,3e-5 1.16893,0.0547 1.62011,0.16406 0.45117,0.0957 0.84081,0.26663 1.16895,0.5127 0.32811,0.23245 0.60155,0.5469 0.82031,0.94336 0.21874,0.38283 0.41015,0.86135 0.57422,1.43554 l 5.74219,15.81153 0.082,0 5.94727,-15.77051 c 0.17771,-0.57419 0.36911,-1.05955 0.57421,-1.45605 0.21873,-0.39646 0.46482,-0.71775 0.73829,-0.96387 0.28708,-0.24607 0.62204,-0.41697 1.00488,-0.5127 0.38278,-0.10935 0.82712,-0.16403 1.33301,-0.16406 l 3.62988,0 c 0.36911,3e-5 0.68356,0.0479 0.94336,0.14356 0.2734,0.0957 0.49215,0.23928 0.65625,0.43066 0.1777,0.17776 0.30758,0.40335 0.38965,0.67676 0.0957,0.25979 0.14352,0.56057 0.14355,0.90234 l 0,23.64551"
|
||||
id="path3818" />
|
||||
</g>
|
||||
<path
|
||||
transform="matrix(1.6,0,0,1.6,-233,-3460.4252)"
|
||||
style="fill:#ffffff;fill-opacity:0.98431373;filter:url(#filter3757)"
|
||||
d="m 445,510.49219 c 0,1.38071 -1.11929,2.5 -2.5,2.5 -1.38071,0 -2.5,-1.11929 -2.5,-2.5 0,-1.38071 1.11929,-2.5 2.5,-2.5 1.38071,0 2.5,1.11929 2.5,2.5 z"
|
||||
id="path3735" />
|
||||
</g>
|
||||
</g>
|
||||
</svg>
|
||||
|
After Width: | Height: | Size: 18 KiB |
@ -0,0 +1,226 @@
|
||||
<!DOCTYPE html>
|
||||
|
||||
<head>
|
||||
<!-- FAVICON -->
|
||||
<link rel="shortcut icon" href="http://gsi.dit.upm.es/templates/purity_iii/favicon.ico" type="image/x-icon">
|
||||
<link rel="icon" href="http://gsi.dit.upm.es/templates/purity_iii/favicon.ico" type="image/x-icon">
|
||||
|
||||
<!-- JQUERY -->
|
||||
<script src="https://code.jquery.com/jquery-3.2.1.min.js"></script>
|
||||
|
||||
<!-- BOOTSTRAP 3.3.7 -->
|
||||
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css">
|
||||
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js"></script>
|
||||
|
||||
<!-- BOOTSTRAP SLIDER -->
|
||||
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-slider/9.9.0/css/bootstrap-slider.css" />
|
||||
<script src="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-slider/9.9.0/bootstrap-slider.js"></script>
|
||||
|
||||
<!-- D3.js // DATA-DRIVEN DOCUMENTS -->
|
||||
<script type="text/javascript" src="http://d3js.org/d3.v3.js"></script>
|
||||
<script type="text/javascript" src="http://labratrevenge.com/d3-tip/javascripts/d3.tip.v0.6.3.js"></script>
|
||||
|
||||
<!-- JAVASCRIPTS -->
|
||||
<script type="text/javascript" src="js/visualization.js"></script>
|
||||
<script type="text/javascript" src="js/timeline.js"></script>
|
||||
<script type="text/javascript" src="js/socket.js"></script>
|
||||
|
||||
<!-- STYLESHEETS -->
|
||||
<link rel="stylesheet" type="text/css" href="css/main.css">
|
||||
<link rel="stylesheet" type="text/css" href="css/timeline.css">
|
||||
|
||||
<title>{{ model_name }}</title>
|
||||
|
||||
<script type="text/javascript">//<![CDATA[
|
||||
|
||||
var width = window.innerWidth * 0.75,
|
||||
height = window.innerHeight * 4 / 5,
|
||||
speed = 1000,
|
||||
play,
|
||||
slider;
|
||||
|
||||
window.onload = function() {
|
||||
"use strict";
|
||||
|
||||
// Create svg, timeline and settings
|
||||
self.GraphVisualization.create('graph');
|
||||
$('<div>').attr('id', 'load').appendTo('#graph_container').css('left', width / 2 - 25).css('top', height / 2);
|
||||
$('#configuration').css("height", height);
|
||||
d3.select('#slider3').attr("width", width).call(
|
||||
d3.slider().axis(true).min(0).max(100)
|
||||
);
|
||||
|
||||
// Load a file
|
||||
$('#configuration #file').change(function() {
|
||||
|
||||
var file = $('#file')[0].files[0];
|
||||
self.GraphVisualization.reset();
|
||||
$('#load').show();
|
||||
|
||||
$('.custom-file-control').attr("data-content",
|
||||
file['name'] || "Choose file..."
|
||||
);
|
||||
|
||||
if ( file['type'] !== "application/x-yaml" ) {
|
||||
console.log('File format not supported. Sorry for the inconvenience.');
|
||||
_socket.error('File format not supported. Sorry for the inconvenience.');
|
||||
return;
|
||||
} else {
|
||||
$('.alert.alert-danger').hide();
|
||||
}
|
||||
|
||||
var fileReader = new FileReader();
|
||||
if (fileReader && file) {
|
||||
fileReader.readAsText(file);
|
||||
fileReader.onload = function () {
|
||||
var content = fileReader.result;
|
||||
$('#load').show().addClass('loader');
|
||||
_socket.send(content, 'config_file');
|
||||
};
|
||||
}
|
||||
|
||||
});
|
||||
|
||||
// Select 'trials'
|
||||
$('.config-item #trials').change(function() {
|
||||
_socket.send($(this).val(), 'get_trial');
|
||||
});
|
||||
|
||||
// Select 'attributes'
|
||||
$('.config-item #properties').change(function() {
|
||||
self.GraphVisualization.update_graph($(this).val(), slider.value(), function() {
|
||||
update_statistics_table();
|
||||
})
|
||||
});
|
||||
|
||||
}
|
||||
|
||||
///]]
|
||||
|
||||
</script>
|
||||
|
||||
</head>
|
||||
|
||||
<body>
|
||||
|
||||
<div class="container-fluid">
|
||||
|
||||
<div id="graph_container">
|
||||
<svg id="graph" class="col-sm-9"></svg>
|
||||
</div>
|
||||
|
||||
<div id="configuration" class="col-sm-3">
|
||||
<!-- Load File -->
|
||||
<form enctype="multipart/form-data">
|
||||
<label class="custom-file">
|
||||
<input type="file" id="file" name="file" class="custom-file-input">
|
||||
<span class="custom-file-control" data-content="Choose file..."></span>
|
||||
</label>
|
||||
</form>
|
||||
<hr />
|
||||
<!-- //Load File -->
|
||||
|
||||
<!-- TRIALS -->
|
||||
<div class="config-item">
|
||||
Trials:
|
||||
<select id="trials" class="form-control form-control-sm">
|
||||
</select>
|
||||
</div>
|
||||
<hr />
|
||||
<!-- //TRIALS -->
|
||||
|
||||
<!-- Graph Info -->
|
||||
<div class="config-item">
|
||||
<table id="info-graph">
|
||||
<tbody>
|
||||
<tr id="nodes"><th>Nodes:</th></tr>
|
||||
<tr id="links"><th>Links:</th></tr>
|
||||
</tbody>
|
||||
</table>
|
||||
<div class="logo pull-right">
|
||||
<img src="img/logo_gsi.svg" style="height: 40px;">
|
||||
</div>
|
||||
</div>
|
||||
<hr />
|
||||
<!-- //Graph Info -->
|
||||
|
||||
<!-- PROPIEDADES -->
|
||||
<div class="config-item">
|
||||
Propiedades:
|
||||
<select id="properties" class="form-control form-control-sm">
|
||||
<optgroup id="properties-dynamic" label="Dynamics"></optgroup>
|
||||
<optgroup id="properties-static" label="Statics"></optgroup>
|
||||
</select>
|
||||
</div>
|
||||
<hr />
|
||||
<div class="config-item">
|
||||
<table id="percentTable">
|
||||
<tbody><tr><th></th></tr></tbody>
|
||||
</table>
|
||||
</div>
|
||||
<hr />
|
||||
<!-- //PROPIEDADES -->
|
||||
|
||||
<!-- SPEED -->
|
||||
<div class="config-item">
|
||||
<table id="speed"><tbody><tr>
|
||||
<th class="text-left min">min</th>
|
||||
<th class="text-center">Speed</th>
|
||||
<th class="text-right max">max</th>
|
||||
</tr></tbody></table>
|
||||
<div class="speed-slider">
|
||||
<input id="speed-slider" type="text" data-slider-min="1" data-slider-max="1000" data-slider-step="0.01" data-slider-value="1000" data-slider-tooltip="hide" data-slider-reversed="true" data-slider-enabled="false" data-slider-scale="logarithmic"/>
|
||||
</div>
|
||||
</div>
|
||||
<hr />
|
||||
<script type="text/javascript">
|
||||
$('#speed-slider').slider();
|
||||
</script>
|
||||
<!-- //SPEED -->
|
||||
|
||||
<!-- LINK DISTANCE -->
|
||||
<div class="config-item">
|
||||
<table id="link-distance"><tbody><tr>
|
||||
<th class="text-left min">min</th>
|
||||
<th class="text-center">Link Distance</th>
|
||||
<th class="text-right max">max</th>
|
||||
</tr></tbody></table>
|
||||
<div class="link-distance-slider">
|
||||
<input id="link-distance-slider" type="text" data-slider-min="30" data-slider-max="1000" data-slider-step="0.01" data-slider-value="30" data-slider-tooltip="hide" data-slider-reversed="false" data-slider-enabled="false" data-slider-scale="logarithmic"/>
|
||||
</div>
|
||||
</div>
|
||||
<script type="text/javascript">
|
||||
$('#link-distance-slider').slider();
|
||||
</script>
|
||||
<!-- //LINK DISTANCE -->
|
||||
</div>
|
||||
|
||||
<!-- TIMELINE -->
|
||||
<div id="timeline" class="col-sm-12">
|
||||
<div id="slider3" class="pull-left col-sm-9"></div>
|
||||
|
||||
<div class="btn-toolbar controls">
|
||||
<button type="button" id="button_play" class="btn btn-lg">
|
||||
<span class="glyphicon glyphicon-play" aria-hidden="true"></span>
|
||||
</button>
|
||||
<button type="button" id="button_pause" class="btn btn-lg">
|
||||
<span class="glyphicon glyphicon-pause" aria-hidden="true"></span>
|
||||
</button>
|
||||
<button type="button" id="button_zoomFit" class="btn btn-lg">
|
||||
<span class="glyphicon glyphicon-fullscreen" aria-hidden="true"></span>
|
||||
</button>
|
||||
</div>
|
||||
</div>
|
||||
<!-- //TIMELINE -->
|
||||
|
||||
<!-- ERROR ALERT -->
|
||||
<div class="alert alert-danger alert-dismissable fade in" style="display: none;">
|
||||
<a href="#" class="close" data-dismiss="alert" aria-label="close">×</a>
|
||||
<strong>Error! </strong><span id="error-message"></span>
|
||||
</div>
|
||||
<!-- //ERROR ALERT -->
|
||||
|
||||
</div>
|
||||
|
||||
</body>
|
||||
</html>
|
||||
@ -0,0 +1,269 @@
|
||||
|
||||
// Open the websocket connection
|
||||
var ws = new WebSocket((window.location.protocol === 'https:' ? 'wss://' : 'ws://') + window.location.host + '/ws');
|
||||
|
||||
// Open conection with Socket
|
||||
ws.onopen = function() {
|
||||
console.log('Connection opened!');
|
||||
};
|
||||
|
||||
// Receive data from server
|
||||
ws.onmessage = function(message) {
|
||||
console.log('Message received!');
|
||||
|
||||
var msg = JSON.parse(message.data);
|
||||
|
||||
switch(msg['type']) {
|
||||
case 'trials':
|
||||
$('#load').removeClass('loader');
|
||||
set_trials(msg['data']);
|
||||
break;
|
||||
|
||||
case 'get_trial':
|
||||
console.log(msg['data']);
|
||||
GraphVisualization.import(convertJSON(msg['data']['graph']), msg['data']['models'], function() {
|
||||
$('#load').hide();
|
||||
reset_configuration();
|
||||
set_configuration();
|
||||
reset_timeline();
|
||||
set_timeline(msg['data']['graph']);
|
||||
});
|
||||
break;
|
||||
|
||||
case 'error':
|
||||
console.log(msg['error']);
|
||||
_socket.error(msg['error']);
|
||||
$('#load').removeClass('loader');
|
||||
|
||||
default:
|
||||
console.log('Unexpected message!')
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
var _socket = {
|
||||
send: function(message, type) {
|
||||
var json = {}
|
||||
json['type'] = type
|
||||
json['data'] = message
|
||||
ws.send(JSON.stringify(json))
|
||||
},
|
||||
error: function(message) {
|
||||
$('#error-message').text(message);
|
||||
$('.alert.alert-danger').show();
|
||||
}
|
||||
};
|
||||
|
||||
var set_trials = function(trials) {
|
||||
for ( i in trials ) {
|
||||
$('<option>').val(i).text(trials[i]).appendTo('select#trials');
|
||||
}
|
||||
// Request first trial as default
|
||||
_socket.send(0, 'get_trial')
|
||||
};
|
||||
|
||||
var convertJSON = function(json) {
|
||||
json.links.forEach(function(link) {
|
||||
link.source = json.nodes[link.source]
|
||||
link.target = json.nodes[link.target]
|
||||
});
|
||||
// Fix spells for nodes
|
||||
json.nodes.forEach(function(node) {
|
||||
for (i in node.spells) {
|
||||
if (node.spells[i][0] > node.spells[i][1]) {
|
||||
aux = node.spells[i][0];
|
||||
node.spells[i][0] = node.spells[i][1];
|
||||
node.spells[i][1] = aux;
|
||||
}
|
||||
}
|
||||
});
|
||||
return json;
|
||||
}
|
||||
|
||||
var update_statistics_table = function() {
|
||||
|
||||
$('#percentTable tbody').empty()
|
||||
|
||||
var statisticsSorted = Object.keys(self.GraphVisualization.statistics).sort(function(a,b) {
|
||||
return self.GraphVisualization.statistics[b] - self.GraphVisualization.statistics[a];
|
||||
});
|
||||
|
||||
for ( var i in statisticsSorted ) {
|
||||
if ( i <= 5 ) {
|
||||
// Draw table
|
||||
var appendTo = '#percentTable > tbody tr:nth-child(' + Number(parseInt(i) + 1) + ')';
|
||||
var propertyName = (statisticsSorted[i].includes('class')) ?
|
||||
statisticsSorted[i].split('.').pop().split('\'')[0] : statisticsSorted[i];
|
||||
|
||||
$('<tr>').addClass('col-sm-12').appendTo('#percentTable > tbody');
|
||||
$('<td>').css('background-color', self.GraphVisualization.color(statisticsSorted[i])).addClass('col-sm-1').appendTo(appendTo);
|
||||
$('<td>').addClass('text-left col-sm-4').text(self.GraphVisualization.statistics[statisticsSorted[i]] + ' %').appendTo(appendTo);
|
||||
$('<td>').addClass('text-right col-sm-6 property-name').text(propertyName).appendTo(appendTo);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
var set_configuration = function() {
|
||||
// Number of nodes and links info table
|
||||
$('<tr>').appendTo('#info-graph > tbody');
|
||||
$('<th>').text('Nodes:').appendTo('#info-graph > tbody tr:nth-child(1)');
|
||||
$('<th>').text(self.GraphVisualization.nodes).addClass('text-right').appendTo('#info-graph > tbody tr:nth-child(1)');
|
||||
|
||||
$('<tr>').appendTo('#info-graph > tbody');
|
||||
$('<th>').text('Links:').appendTo('#info-graph > tbody tr:nth-child(2)');
|
||||
$('<th>').text(self.GraphVisualization.links).addClass('text-right').appendTo('#info-graph > tbody tr:nth-child(2)');
|
||||
|
||||
// Options of 'Select'
|
||||
for ( var i in self.GraphVisualization.model['dynamic'] ) {
|
||||
$('<option>').val(self.GraphVisualization.model['dynamic'][i].title)
|
||||
.text(self.GraphVisualization.model['dynamic'][i].title).appendTo('#properties-dynamic');
|
||||
}
|
||||
for ( var i in self.GraphVisualization.model['static'] ) {
|
||||
$('<option>').val(self.GraphVisualization.model['static'][i].title)
|
||||
.text(self.GraphVisualization.model['static'][i].title).appendTo('#properties-static');
|
||||
}
|
||||
|
||||
// Hide optgroups if they are empty
|
||||
if ( $('#properties-dynamic').children().length === 0 ) $('#properties-dynamic').hide();
|
||||
if ( $('#properties-static').children().length === 0 ) $('#properties-static').hide();
|
||||
|
||||
update_statistics_table();
|
||||
|
||||
// Enable 'Link Distance' slider
|
||||
$('#link-distance-slider').slider('enable').on('change', function(value) {
|
||||
self.GraphVisualization.set_link_distance(value.value.newValue);
|
||||
});
|
||||
}
|
||||
|
||||
var reset_configuration = function() {
|
||||
// Information table about the graph
|
||||
$('#info-graph > tbody').empty();
|
||||
|
||||
// 'Select' for properties
|
||||
$('#properties-dynamic').empty().show();
|
||||
$('#properties-static').empty().show();
|
||||
|
||||
// 'Link Distance' slider
|
||||
$('#link-distance-slider').slider('disable').slider('setValue', 30);
|
||||
|
||||
}
|
||||
|
||||
var set_timeline = function(graph) {
|
||||
// 'Timeline' slider
|
||||
var [min, max] = get_min_and_max(graph);
|
||||
|
||||
var stepUnix = (max - min) / 200;
|
||||
var minUnix = (min !== Math.min()) ? min : 0;
|
||||
var maxUnix = (max !== Math.max()) ? max : minUnix + 20;
|
||||
|
||||
slider = d3.slider();
|
||||
d3.select('#slider3').attr('width', width).call(
|
||||
slider.axis(true).min(minUnix).max(maxUnix).step(stepUnix).value(maxUnix)
|
||||
.on('slide', function(evt, value) {
|
||||
self.GraphVisualization.update_graph($('.config-item #properties').val(), value, function() {
|
||||
update_statistics_table();
|
||||
});
|
||||
})
|
||||
);
|
||||
|
||||
// Draw graph for the first time
|
||||
self.GraphVisualization.update_graph($('.config-item #properties').val(), maxUnix, function() {
|
||||
update_statistics_table();
|
||||
});
|
||||
|
||||
// 'Speed' slider
|
||||
$('#speed-slider').slider('enable').on('change', function(value) {
|
||||
speed = value.value.newValue;
|
||||
});
|
||||
|
||||
// Button 'Play'
|
||||
$('button#button_play').on('click', function() {
|
||||
|
||||
$('button#button_play').addClass('pressed').prop("disabled", true);
|
||||
$('#speed-slider').slider('disable');
|
||||
slider.step( 1 / speed );
|
||||
|
||||
if (slider.value() >= maxUnix) {
|
||||
slider.value(minUnix);
|
||||
self.GraphVisualization.update_graph($('.config-item #properties').val(), slider.value(), function() {
|
||||
update_statistics_table();
|
||||
});
|
||||
setTimeout(player, 1000);
|
||||
} else {
|
||||
player();
|
||||
}
|
||||
|
||||
var i = slider.value();
|
||||
function player() {
|
||||
clearInterval(play);
|
||||
play = setInterval(function() {
|
||||
self.GraphVisualization.update_graph($('.config-item #properties').val(), slider.value(), function() {
|
||||
update_statistics_table();
|
||||
});
|
||||
|
||||
if (slider.value() + slider.step() >= maxUnix) {
|
||||
slider.value(maxUnix);
|
||||
slider.step(stepUnix);
|
||||
clearInterval(play);
|
||||
$('button#button_play').removeClass('pressed').prop("disabled", false);
|
||||
$('#speed-slider').slider('enable');
|
||||
} else {
|
||||
slider.value(i);
|
||||
i += slider.step();
|
||||
}
|
||||
|
||||
}, 5);
|
||||
}
|
||||
});
|
||||
|
||||
// Button 'Pause'
|
||||
$('button#button_pause').on('click', function() {
|
||||
clearInterval(play);
|
||||
slider.step(stepUnix);
|
||||
$('button#button_play').removeClass('pressed').prop("disabled", false);
|
||||
$('#speed-slider').slider('enable');
|
||||
});
|
||||
|
||||
// Button 'Zoom to Fit'
|
||||
$('button#button_zoomFit').click(function() { self.GraphVisualization.fit(); });
|
||||
}
|
||||
|
||||
var reset_timeline = function() {
|
||||
// 'Timeline' slider
|
||||
$('#slider3').html('');
|
||||
|
||||
// 'Speed' slider
|
||||
$('#speed-slider').slider('disable').slider('setValue', 1000);
|
||||
|
||||
// Buttons
|
||||
clearInterval(play);
|
||||
$('button#button_play').off().removeClass('pressed').prop("disabled", false);
|
||||
$('button#button_pause').off();
|
||||
$('button#button_zoomFit').off();
|
||||
}
|
||||
|
||||
var get_min_and_max = function(graph) {
|
||||
var max = Math.max();
|
||||
var min = Math.min()
|
||||
graph.links.forEach(function(link) {
|
||||
if (link.end > max) max = link.end
|
||||
if (link.start > max) max = link.start
|
||||
if (link.end < min) min = link.end
|
||||
if (link.start < min) min = link.start
|
||||
});
|
||||
graph.nodes.forEach(function(node) {
|
||||
for (property in node) {
|
||||
if ( Array.isArray(node[property]) ) {
|
||||
|
||||
for (i in node[property]) {
|
||||
for (j in node[property][i]) {
|
||||
if (node[property][i][j] > max) max = node[property][i][j];
|
||||
if (node[property][i][j] < min) min = node[property][i][j];
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
}
|
||||
})
|
||||
return [min, max];
|
||||
}
|
||||
@ -0,0 +1,429 @@
|
||||
/*
|
||||
D3.js Slider
|
||||
Inspired by jQuery UI Slider
|
||||
Copyright (c) 2013, Bjorn Sandvik - http://blog.thematicmapping.org
|
||||
BSD license: http://opensource.org/licenses/BSD-3-Clause
|
||||
*/
|
||||
(function (root, factory) {
|
||||
if (typeof define === 'function' && define.amd) {
|
||||
// AMD. Register as an anonymous module.
|
||||
define(['d3'], factory);
|
||||
} else if (typeof exports === 'object') {
|
||||
if (process.browser) {
|
||||
// Browserify. Import css too using cssify.
|
||||
require('./d3.slider.css');
|
||||
}
|
||||
// Node. Does not work with strict CommonJS, but
|
||||
// only CommonJS-like environments that support module.exports,
|
||||
// like Node.
|
||||
module.exports = factory(require('d3'));
|
||||
} else {
|
||||
// Browser globals (root is window)
|
||||
root.d3.slider = factory(root.d3);
|
||||
}
|
||||
}(this, function (d3) {
|
||||
return function module() {
|
||||
"use strict";
|
||||
|
||||
// Public variables width default settings
|
||||
var min = 0,
|
||||
max = 100,
|
||||
step = 0.01,
|
||||
animate = true,
|
||||
orientation = "horizontal",
|
||||
axis = false,
|
||||
margin = 50,
|
||||
value,
|
||||
active = 1,
|
||||
snap = false,
|
||||
scale;
|
||||
|
||||
// Private variables
|
||||
var axisScale,
|
||||
dispatch = d3.dispatch("slide", "slideend"),
|
||||
formatPercent = d3.format(".2%"),
|
||||
tickPadding = 5,
|
||||
tickFormat = d3.format(".0"),
|
||||
handle1,
|
||||
handle2 = null,
|
||||
divRange,
|
||||
sliderLength;
|
||||
|
||||
function slider(selection) {
|
||||
selection.each(function() {
|
||||
|
||||
// Create scale if not defined by user
|
||||
if (!scale) {
|
||||
scale = d3.scale.linear().domain([min, max]);
|
||||
}
|
||||
|
||||
// Start value
|
||||
value = value || scale.domain()[0];
|
||||
|
||||
// DIV container
|
||||
var div = d3.select(this).classed("d3-slider d3-slider-" + orientation, true);
|
||||
|
||||
var drag = d3.behavior.drag();
|
||||
drag.on('dragend', function () {
|
||||
dispatch.slideend(d3.event, value);
|
||||
})
|
||||
|
||||
// Slider handle
|
||||
//if range slider, create two
|
||||
// var divRange;
|
||||
|
||||
if (toType(value) == "array" && value.length == 2) {
|
||||
handle1 = div.append("a")
|
||||
.classed("d3-slider-handle", true)
|
||||
.attr("xlink:href", "#")
|
||||
.attr('id', "handle-one")
|
||||
.on("click", stopPropagation)
|
||||
.call(drag);
|
||||
handle2 = div.append("a")
|
||||
.classed("d3-slider-handle", true)
|
||||
.attr('id', "handle-two")
|
||||
.attr("xlink:href", "#")
|
||||
.on("click", stopPropagation)
|
||||
.call(drag);
|
||||
} else {
|
||||
handle1 = div.append("a")
|
||||
.classed("d3-slider-handle", true)
|
||||
.attr("xlink:href", "#")
|
||||
.attr('id', "handle-one")
|
||||
.on("click", stopPropagation)
|
||||
.call(drag);
|
||||
}
|
||||
|
||||
// Horizontal slider
|
||||
if (orientation === "horizontal") {
|
||||
|
||||
div.on("click", onClickHorizontal);
|
||||
|
||||
if (toType(value) == "array" && value.length == 2) {
|
||||
divRange = d3.select(this).append('div').classed("d3-slider-range", true);
|
||||
|
||||
handle1.style("left", formatPercent(scale(value[ 0 ])));
|
||||
divRange.style("left", formatPercent(scale(value[ 0 ])));
|
||||
drag.on("drag", onDragHorizontal);
|
||||
|
||||
var width = 100 - parseFloat(formatPercent(scale(value[ 1 ])));
|
||||
handle2.style("left", formatPercent(scale(value[ 1 ])));
|
||||
divRange.style("right", width+"%");
|
||||
drag.on("drag", onDragHorizontal);
|
||||
|
||||
} else {
|
||||
handle1.style("left", formatPercent(scale(value)));
|
||||
drag.on("drag", onDragHorizontal);
|
||||
}
|
||||
|
||||
sliderLength = parseInt(div.style("width"), 10);
|
||||
|
||||
} else { // Vertical
|
||||
|
||||
div.on("click", onClickVertical);
|
||||
drag.on("drag", onDragVertical);
|
||||
if (toType(value) == "array" && value.length == 2) {
|
||||
divRange = d3.select(this).append('div').classed("d3-slider-range-vertical", true);
|
||||
|
||||
handle1.style("bottom", formatPercent(scale(value[ 0 ])));
|
||||
divRange.style("bottom", formatPercent(scale(value[ 0 ])));
|
||||
drag.on("drag", onDragVertical);
|
||||
|
||||
var top = 100 - parseFloat(formatPercent(scale(value[ 1 ])));
|
||||
handle2.style("bottom", formatPercent(scale(value[ 1 ])));
|
||||
divRange.style("top", top+"%");
|
||||
drag.on("drag", onDragVertical);
|
||||
|
||||
} else {
|
||||
handle1.style("bottom", formatPercent(scale(value)));
|
||||
drag.on("drag", onDragVertical);
|
||||
}
|
||||
|
||||
sliderLength = parseInt(div.style("height"), 10);
|
||||
|
||||
}
|
||||
|
||||
if (axis) {
|
||||
createAxis(div);
|
||||
}
|
||||
|
||||
|
||||
function createAxis(dom) {
|
||||
|
||||
// Create axis if not defined by user
|
||||
if (typeof axis === "boolean") {
|
||||
|
||||
axis = d3.svg.axis()
|
||||
.ticks(Math.round(sliderLength) / 100)
|
||||
.tickFormat(tickFormat)
|
||||
.tickPadding(tickPadding)
|
||||
.orient((orientation === "horizontal") ? "bottom" : "right");
|
||||
|
||||
}
|
||||
|
||||
// Copy slider scale to move from percentages to pixels
|
||||
axisScale = scale.ticks ? scale.copy().range([0, sliderLength]) : scale.copy().rangePoints([0, sliderLength], 0.5);
|
||||
axis.scale(axisScale);
|
||||
|
||||
// Create SVG axis container
|
||||
var svg = dom.append("svg")
|
||||
.classed("d3-slider-axis d3-slider-axis-" + axis.orient(), true)
|
||||
.on("click", stopPropagation);
|
||||
|
||||
var g = svg.append("g");
|
||||
|
||||
// Horizontal axis
|
||||
if (orientation === "horizontal") {
|
||||
|
||||
svg.style("margin-left", -margin - 16 + "px");
|
||||
|
||||
svg.attr({
|
||||
width: sliderLength + margin * 2,
|
||||
height: margin + 30
|
||||
});
|
||||
|
||||
if (axis.orient() === "top") {
|
||||
svg.style("top", -margin + "px");
|
||||
g.attr("transform", "translate(" + margin + "," + margin + ")");
|
||||
} else { // bottom
|
||||
g.attr("transform", "translate(" + margin + ",0)");
|
||||
}
|
||||
|
||||
} else { // Vertical
|
||||
|
||||
svg.style("top", -margin + "px");
|
||||
|
||||
svg.attr({
|
||||
width: margin,
|
||||
height: sliderLength + margin * 2
|
||||
});
|
||||
|
||||
if (axis.orient() === "left") {
|
||||
svg.style("left", -margin + "px");
|
||||
g.attr("transform", "translate(" + margin + "," + margin + ")");
|
||||
} else { // right
|
||||
g.attr("transform", "translate(" + 0 + "," + margin + ")");
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
g.call(axis);
|
||||
|
||||
}
|
||||
|
||||
function onClickHorizontal() {
|
||||
if (toType(value) != "array") {
|
||||
var pos = Math.max(0, Math.min(sliderLength, d3.event.offsetX || d3.event.layerX));
|
||||
moveHandle(scale.invert ?
|
||||
stepValue(scale.invert(pos / sliderLength))
|
||||
: nearestTick(pos / sliderLength));
|
||||
}
|
||||
}
|
||||
|
||||
function onClickVertical() {
|
||||
if (toType(value) != "array") {
|
||||
var pos = sliderLength - Math.max(0, Math.min(sliderLength, d3.event.offsetY || d3.event.layerY));
|
||||
moveHandle(scale.invert ?
|
||||
stepValue(scale.invert(pos / sliderLength))
|
||||
: nearestTick(pos / sliderLength));
|
||||
}
|
||||
}
|
||||
|
||||
function onDragHorizontal() {
|
||||
if ( d3.event.sourceEvent.target.id === "handle-one") {
|
||||
active = 1;
|
||||
} else if ( d3.event.sourceEvent.target.id == "handle-two" ) {
|
||||
active = 2;
|
||||
}
|
||||
var pos = Math.max(0, Math.min(sliderLength, d3.event.x));
|
||||
moveHandle(scale.invert ?
|
||||
stepValue(scale.invert(pos / sliderLength))
|
||||
: nearestTick(pos / sliderLength));
|
||||
}
|
||||
|
||||
function onDragVertical() {
|
||||
if ( d3.event.sourceEvent.target.id === "handle-one") {
|
||||
active = 1;
|
||||
} else if ( d3.event.sourceEvent.target.id == "handle-two" ) {
|
||||
active = 2;
|
||||
}
|
||||
var pos = sliderLength - Math.max(0, Math.min(sliderLength, d3.event.y))
|
||||
moveHandle(scale.invert ?
|
||||
stepValue(scale.invert(pos / sliderLength))
|
||||
: nearestTick(pos / sliderLength));
|
||||
}
|
||||
|
||||
function stopPropagation() {
|
||||
d3.event.stopPropagation();
|
||||
}
|
||||
|
||||
});
|
||||
|
||||
}
|
||||
|
||||
// Move slider handle on click/drag
|
||||
function moveHandle(newValue) {
|
||||
var currentValue = toType(value) == "array" && value.length == 2 ? value[active - 1]: value,
|
||||
oldPos = formatPercent(scale(stepValue(currentValue))),
|
||||
newPos = formatPercent(scale(stepValue(newValue))),
|
||||
position = (orientation === "horizontal") ? "left" : "bottom";
|
||||
if (oldPos !== newPos) {
|
||||
|
||||
if (toType(value) == "array" && value.length == 2) {
|
||||
value[ active - 1 ] = newValue;
|
||||
if (d3.event) {
|
||||
dispatch.slide(d3.event, value );
|
||||
};
|
||||
} else {
|
||||
if (d3.event) {
|
||||
dispatch.slide(d3.event.sourceEvent || d3.event, value = newValue);
|
||||
};
|
||||
}
|
||||
|
||||
if ( value[ 0 ] >= value[ 1 ] ) return;
|
||||
if ( active === 1 ) {
|
||||
if (toType(value) == "array" && value.length == 2) {
|
||||
(position === "left") ? divRange.style("left", newPos) : divRange.style("bottom", newPos);
|
||||
}
|
||||
|
||||
if (animate) {
|
||||
handle1.transition()
|
||||
.styleTween(position, function() { return d3.interpolate(oldPos, newPos); })
|
||||
.duration((typeof animate === "number") ? animate : 250);
|
||||
} else {
|
||||
handle1.style(position, newPos);
|
||||
}
|
||||
} else {
|
||||
|
||||
var width = 100 - parseFloat(newPos);
|
||||
var top = 100 - parseFloat(newPos);
|
||||
|
||||
(position === "left") ? divRange.style("right", width + "%") : divRange.style("top", top + "%");
|
||||
|
||||
if (animate) {
|
||||
handle2.transition()
|
||||
.styleTween(position, function() { return d3.interpolate(oldPos, newPos); })
|
||||
.duration((typeof animate === "number") ? animate : 250);
|
||||
} else {
|
||||
handle2.style(position, newPos);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Calculate nearest step value
|
||||
function stepValue(val) {
|
||||
|
||||
if (val === scale.domain()[0] || val === scale.domain()[1]) {
|
||||
return val;
|
||||
}
|
||||
|
||||
var alignValue = val;
|
||||
if (snap) {
|
||||
alignValue = nearestTick(scale(val));
|
||||
} else{
|
||||
var valModStep = (val - scale.domain()[0]) % step;
|
||||
alignValue = val - valModStep;
|
||||
|
||||
if (Math.abs(valModStep) * 2 >= step) {
|
||||
alignValue += (valModStep > 0) ? step : -step;
|
||||
}
|
||||
};
|
||||
|
||||
return alignValue;
|
||||
|
||||
}
|
||||
|
||||
// Find the nearest tick
|
||||
function nearestTick(pos) {
|
||||
var ticks = scale.ticks ? scale.ticks() : scale.domain();
|
||||
var dist = ticks.map(function(d) {return pos - scale(d);});
|
||||
var i = -1,
|
||||
index = 0,
|
||||
r = scale.ticks ? scale.range()[1] : scale.rangeExtent()[1];
|
||||
do {
|
||||
i++;
|
||||
if (Math.abs(dist[i]) < r) {
|
||||
r = Math.abs(dist[i]);
|
||||
index = i;
|
||||
};
|
||||
} while (dist[i] > 0 && i < dist.length - 1);
|
||||
|
||||
return ticks[index];
|
||||
};
|
||||
|
||||
// Return the type of an object
|
||||
function toType(v) {
|
||||
return ({}).toString.call(v).match(/\s([a-zA-Z]+)/)[1].toLowerCase();
|
||||
};
|
||||
|
||||
// Getter/setter functions
|
||||
slider.min = function(_) {
|
||||
if (!arguments.length) return min;
|
||||
min = _;
|
||||
return slider;
|
||||
};
|
||||
|
||||
slider.max = function(_) {
|
||||
if (!arguments.length) return max;
|
||||
max = _;
|
||||
return slider;
|
||||
};
|
||||
|
||||
slider.step = function(_) {
|
||||
if (!arguments.length) return step;
|
||||
step = _;
|
||||
return slider;
|
||||
};
|
||||
|
||||
slider.animate = function(_) {
|
||||
if (!arguments.length) return animate;
|
||||
animate = _;
|
||||
return slider;
|
||||
};
|
||||
|
||||
slider.orientation = function(_) {
|
||||
if (!arguments.length) return orientation;
|
||||
orientation = _;
|
||||
return slider;
|
||||
};
|
||||
|
||||
slider.axis = function(_) {
|
||||
if (!arguments.length) return axis;
|
||||
axis = _;
|
||||
return slider;
|
||||
};
|
||||
|
||||
slider.margin = function(_) {
|
||||
if (!arguments.length) return margin;
|
||||
margin = _;
|
||||
return slider;
|
||||
};
|
||||
|
||||
slider.value = function(_) {
|
||||
if (!arguments.length) return value;
|
||||
if (value) {
|
||||
moveHandle(stepValue(_));
|
||||
};
|
||||
value = _;
|
||||
return slider;
|
||||
};
|
||||
|
||||
slider.snap = function(_) {
|
||||
if (!arguments.length) return snap;
|
||||
snap = _;
|
||||
return slider;
|
||||
};
|
||||
|
||||
slider.scale = function(_) {
|
||||
if (!arguments.length) return scale;
|
||||
scale = _;
|
||||
return slider;
|
||||
};
|
||||
|
||||
d3.rebind(slider, dispatch, "on");
|
||||
|
||||
return slider;
|
||||
|
||||
}
|
||||
}));
|
||||
@ -0,0 +1,426 @@
|
||||
|
||||
;(function(undefined) {
|
||||
"use strict";
|
||||
|
||||
/**
|
||||
* Graph Visualization
|
||||
* ===================
|
||||
*
|
||||
* Author: Tasio Méndez (tasiomendez)
|
||||
* URL: https://github.com/tasiomendez/
|
||||
* Version: 0.1
|
||||
*/
|
||||
|
||||
// Private constants
|
||||
var width = window.innerWidth * 0.75,
|
||||
height = window.innerHeight * 4 / 5,
|
||||
focus_opacity = 0.1,
|
||||
radius = 8;
|
||||
|
||||
// Private variables
|
||||
var graph, // JSON data for the graph
|
||||
model, // Definition of the attributes of the nodes
|
||||
linkedByIndex, // Nodes linked by index
|
||||
name, // Name of the graph (id for svg item)
|
||||
svg, // Svg item
|
||||
force, // Set up the force layout
|
||||
color, // Color for nodes
|
||||
zoom, // Zoom
|
||||
|
||||
groot, // Append sections to svg to have nodes and edges separately
|
||||
glinks,
|
||||
gnodes,
|
||||
data_node, // Actual node data for the graph
|
||||
data_link, // Actual link data for the graph
|
||||
|
||||
link, // Line svgs
|
||||
node; // Circles for the nodes
|
||||
|
||||
Number.prototype.between = function(min, max) {
|
||||
var min = (min) ? min : Math.max(),
|
||||
max = (max) ? max : Math.min();
|
||||
|
||||
return this > min && this <= max;
|
||||
};
|
||||
|
||||
var lastFocusNode;
|
||||
var _helpers = {
|
||||
set_node: function(node, property) {
|
||||
// Add nodes if data has more nodes than before
|
||||
node.enter().append('circle')
|
||||
.attr('class', 'node')
|
||||
.attr('r', radius)
|
||||
.style('fill', function (d) {
|
||||
if ( Array.isArray(d[property]) ) {
|
||||
return color(d[property][0][0]);
|
||||
} else {
|
||||
return color(d[property]);
|
||||
}
|
||||
})
|
||||
// Cancel zoom movement so you can move the node
|
||||
.on('mousedown', function(d) {
|
||||
d3.event.stopPropagation();
|
||||
})
|
||||
// Double-click to focus neighbours
|
||||
.on('dblclick', function(d) {
|
||||
d3.event.stopPropagation();
|
||||
if (d === lastFocusNode) {
|
||||
lastFocusNode = undefined;
|
||||
node.style('opacity', 1);
|
||||
link.style('opacity', 1);
|
||||
} else {
|
||||
lastFocusNode = d;
|
||||
_helpers.set_focus(d);
|
||||
}
|
||||
}).call(force.drag);
|
||||
|
||||
// Remove nodes if data has less nodes than before
|
||||
node.exit().remove();
|
||||
|
||||
// Update existing nodes
|
||||
node.attr('class', 'node')
|
||||
.attr('r', radius)
|
||||
.style('fill', function (d) {
|
||||
if ( Array.isArray(d[property]) ) {
|
||||
return color(d[property][0][0]);
|
||||
} else {
|
||||
return color(d[property]);
|
||||
}
|
||||
});
|
||||
},
|
||||
set_link: function(link) {
|
||||
// Remove links if data has more links than before
|
||||
link.enter().append('line')
|
||||
.attr('class', 'link')
|
||||
.style('stroke-width', function (d) {
|
||||
return Math.sqrt(d.value);
|
||||
});
|
||||
|
||||
// Remove links if data has less links than before
|
||||
link.exit().remove();
|
||||
},
|
||||
isConnected: function(source, neighbour) {
|
||||
return linkedByIndex[source.id + ',' + neighbour.id] ||
|
||||
linkedByIndex[neighbour.id + ',' + source.id];
|
||||
},
|
||||
set_focus: function(d) {
|
||||
node.style('opacity', function(o) {
|
||||
return _helpers.isConnected(d,o) || d.index == o.index ? 1 : focus_opacity;
|
||||
});
|
||||
link.style('opacity', function(o) {
|
||||
return o.source.index == d.index || o.target.index == d.index ? 1 : focus_opacity;
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Graph Visualization Core Functions
|
||||
* ----------------------------------
|
||||
*
|
||||
* The graph visualization functions themselves.
|
||||
*/
|
||||
|
||||
function Graph() {
|
||||
// Color
|
||||
color = d3.scale.category20();
|
||||
|
||||
// Set up the force layout
|
||||
force = d3.layout.force()
|
||||
.charge(-500)
|
||||
.linkDistance(30)
|
||||
.size([width, height]);
|
||||
|
||||
// Append sections to svg to have nodes and edges separately
|
||||
groot = svg.append('g') .attr('id', 'root');
|
||||
glinks = groot.append('g') .attr('id', 'links');
|
||||
gnodes = groot.append('g') .attr('id', 'nodes');
|
||||
|
||||
// Zoom
|
||||
zoom = d3.behavior
|
||||
.zoom()
|
||||
.scaleExtent([1/10, 10])
|
||||
.on('zoom', function () {
|
||||
//console.trace("zoom", d3.event.translate, d3.event.scale);
|
||||
groot.attr('transform',
|
||||
'translate(' + d3.event.translate + ')scale(' + d3.event.scale + ')');
|
||||
});
|
||||
|
||||
// Activate zoom for the svg item
|
||||
svg.style('background-color', 'rgb(255,255,255)')
|
||||
.call(zoom);
|
||||
|
||||
// Update linkedByIndex
|
||||
linkedByIndex = {};
|
||||
graph.links.forEach(function(d) {
|
||||
linkedByIndex[d.source.id + ',' + d.target.id] = true;
|
||||
});
|
||||
|
||||
// Creates the graph data structure out of the json data
|
||||
force.nodes(graph.nodes)
|
||||
.links(graph.links)
|
||||
.start();
|
||||
|
||||
// Now we are giving the SVGs coordinates - the force layout is generating the coordinates
|
||||
// which this code is using to update the attributes of the SVG elements
|
||||
force.on('tick', function () {
|
||||
|
||||
link.attr('x1', function (d) {
|
||||
return d.source.x;
|
||||
}).attr('y1', function (d) {
|
||||
return d.source.y;
|
||||
}).attr('x2', function (d) {
|
||||
return d.target.x;
|
||||
}).attr('y2', function (d) {
|
||||
return d.target.y;
|
||||
});
|
||||
|
||||
node.attr('transform', function translate(d) {
|
||||
return 'translate(' + d.x + ',' + d.y + ')';
|
||||
});
|
||||
});
|
||||
|
||||
}
|
||||
|
||||
function update_data(property, time) {
|
||||
|
||||
// Reset data
|
||||
var delete_links = true;
|
||||
data_node = [];
|
||||
data_link = graph.links.slice();
|
||||
|
||||
// Nodes
|
||||
graph.nodes.forEach(function(node) {
|
||||
if (Array.isArray(node.spells)) {
|
||||
node.spells.forEach( function(d) {
|
||||
if ( time.between(d[0], d[1]) ) {
|
||||
data_node.push(node);
|
||||
} else {
|
||||
graph.links.forEach(function(link) {
|
||||
if (link.source === node || link.target === node)
|
||||
data_link.splice(data_link.indexOf(link), 1);
|
||||
});
|
||||
}
|
||||
});
|
||||
|
||||
} else {
|
||||
data_node.push(node);
|
||||
}
|
||||
});
|
||||
|
||||
// Links
|
||||
graph.links.forEach(function(link) {
|
||||
if ( !(time.between(link.start, link.end)) && data_link.includes(link) )
|
||||
data_link.splice(data_link.indexOf(link), 1);
|
||||
});
|
||||
|
||||
// Reset force
|
||||
force.stop()
|
||||
.nodes(data_node)
|
||||
.links(data_link)
|
||||
.start();
|
||||
|
||||
// Create all the line svgs but without locations
|
||||
link = glinks.selectAll('.link').data(data_link);
|
||||
_helpers.set_link(link);
|
||||
|
||||
// Do the same with the circles for the nodes - no
|
||||
node = gnodes.selectAll('.node').data(data_node);
|
||||
_helpers.set_node(node, property);
|
||||
|
||||
// Node Attributes
|
||||
var statistics = {}
|
||||
self.GraphVisualization.statistics = {};
|
||||
data_node.forEach(function(n) {
|
||||
// Count node properties
|
||||
if ( Array.isArray(n[property]) ) {
|
||||
statistics[n[property][0][0]] = (!statistics[n[property][0][0]]) ? 1 : statistics[n[property][0][0]] + 1;
|
||||
} else {
|
||||
statistics[n[property]] = (!statistics[n[property]]) ? 1 : statistics[n[property]] + 1;
|
||||
}
|
||||
});
|
||||
for ( i in statistics ) {
|
||||
statistics[i] = (statistics[i] / data_node.length * 100).toFixed(2);
|
||||
}
|
||||
self.GraphVisualization.statistics = statistics
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Public API
|
||||
* -----------
|
||||
*
|
||||
* User-accessible functions.
|
||||
*/
|
||||
|
||||
/**
|
||||
* Create the space where the graph will we drawn.
|
||||
* A function that identifies the svg item.
|
||||
*
|
||||
* @param {object} id The id of the svg item.
|
||||
* @return {object} This class.
|
||||
*/
|
||||
function create(id, callback) {
|
||||
name = id;
|
||||
svg = d3.select('svg#' + name)
|
||||
.attr('width', width)
|
||||
.attr('height', height)
|
||||
.style('background-color', 'rgba(128,128,128,0.1)');
|
||||
|
||||
if (callback) { callback(this.GraphVisualization); }
|
||||
else { return this.GraphVisualization }
|
||||
}
|
||||
|
||||
/**
|
||||
* Import JSON and attributes.
|
||||
* A function that imports the graph and the attributes of all the nodes.
|
||||
*
|
||||
* @param {object} json The json structure of the graph.
|
||||
* @param {object} attributes Definition of the attributes of the nodes
|
||||
* (statics and dynamics).
|
||||
* @param {object} callback A function called at the end.
|
||||
*/
|
||||
function importJSON(json, attributes, callback) {
|
||||
reset()
|
||||
graph = json;
|
||||
model = attributes
|
||||
|
||||
// Create the graph itself
|
||||
Graph();
|
||||
|
||||
self.GraphVisualization.nodes = graph.nodes.length;
|
||||
self.GraphVisualization.links = graph.links.length;
|
||||
self.GraphVisualization.model = model
|
||||
|
||||
// Draw graph with default property and time for the first time
|
||||
update_data(model.dynamic[0].title, 0)
|
||||
|
||||
if (callback) { callback(); }
|
||||
}
|
||||
|
||||
/**
|
||||
* Set link distance.
|
||||
* A function that set the link distance. If it is not called, it uses 30 as default
|
||||
*
|
||||
* @param {object} distance Distance.
|
||||
* @param {object} callback A function called at the end.
|
||||
*/
|
||||
function set_link_distance(distance, callback) {
|
||||
if (graph) {
|
||||
force.stop().linkDistance(distance).start();
|
||||
|
||||
// Update radius of the nodes to see them better
|
||||
var r = d3.scale.linear().domain([30, 1000]).range([8, 24]);
|
||||
radius = r(distance);
|
||||
node.attr('r', radius);
|
||||
|
||||
if (callback) { callback(radius); }
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Set property and instant of time.
|
||||
* A function that draws the graph depends on the property and instant of time selected.
|
||||
*
|
||||
* @param {object} property Property to show.
|
||||
* @param {object} time Instant of time.
|
||||
* @param {object} callback A function called at the end.
|
||||
*/
|
||||
function update_graph(property, time, callback) {
|
||||
if (graph) {
|
||||
update_data(property, time);
|
||||
|
||||
if (callback) { callback(); }
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Adjust the graph to the whole area.
|
||||
* A function that adjust the graph to the svg item.
|
||||
*
|
||||
* @param {object} padding Space from the graph to the border.
|
||||
* 85% by default.
|
||||
* @param {object} transition Duration of the zoom action.
|
||||
* 750 milliseconds by default.
|
||||
* @param {object} callback A function called at the end.
|
||||
*/
|
||||
function zoom_to_fit(padding, transition, callback) {
|
||||
|
||||
var bounds = groot.node().getBBox();
|
||||
var parent = groot.node().parentElement;
|
||||
var fullWidth = parent.clientWidth,
|
||||
fullHeight = parent.clientHeight;
|
||||
var widthBounds = bounds.width,
|
||||
heightBounds = bounds.height;
|
||||
var midX = bounds.x + widthBounds / 2,
|
||||
midY = bounds.y + heightBounds / 2;
|
||||
if (widthBounds == 0 || heightBounds == 0) return; // nothing to fit
|
||||
var scale = (padding || 0.85) / Math.max(widthBounds / fullWidth, heightBounds / fullHeight);
|
||||
var translate = [fullWidth / 2 - scale * midX, fullHeight / 2 - scale * midY];
|
||||
|
||||
//console.trace("zoomFit", translate, scale);
|
||||
groot
|
||||
.transition()
|
||||
.duration(transition || 750) // milliseconds
|
||||
.call(zoom.translate(translate).scale(scale).event);
|
||||
|
||||
if (callback) { callback(); }
|
||||
}
|
||||
|
||||
/**
|
||||
* Reset the whole graph.
|
||||
* A function that reset the svg item.
|
||||
*
|
||||
*/
|
||||
function reset() {
|
||||
d3.select('svg#' + name)
|
||||
.html('')
|
||||
.attr('width', width)
|
||||
.attr('height', height)
|
||||
.style('background-color', 'rgba(128,128,128,0.1)');
|
||||
}
|
||||
|
||||
/**
|
||||
* Get color for a value.
|
||||
* A function that get the color of a node or a group of nodes.
|
||||
*
|
||||
* @param {object} value Value.
|
||||
* @return {object} color The color in hexadecimal.
|
||||
*/
|
||||
function color(value) {
|
||||
if (graph) {
|
||||
return color(value);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Exporting
|
||||
* ---------
|
||||
*/
|
||||
this.GraphVisualization = {
|
||||
|
||||
// Functions
|
||||
create: create,
|
||||
import: importJSON,
|
||||
update_graph: update_graph,
|
||||
set_link_distance: set_link_distance,
|
||||
fit: zoom_to_fit,
|
||||
reset: reset,
|
||||
|
||||
// Attributes
|
||||
model: {},
|
||||
nodes: undefined,
|
||||
links: undefined,
|
||||
|
||||
// Getters
|
||||
color: color,
|
||||
|
||||
// Statistics
|
||||
statistics: {},
|
||||
|
||||
// Version
|
||||
version: '0.1'
|
||||
};
|
||||
|
||||
}).call(this);
|
||||
@ -0,0 +1,20 @@
|
||||
|
||||
|
||||
var _helpers = {
|
||||
attributesInterval: function (attributes, callback) {
|
||||
for ( var property in attributes ) {
|
||||
for ( var i = 0; i < attributes[property].length; i++ ) {
|
||||
attributes[property][i].interval.forEach(function(d) {
|
||||
callback(d);
|
||||
});
|
||||
}
|
||||
}
|
||||
},
|
||||
dynamicAttsToArray: function(atts) {
|
||||
var array = []
|
||||
for ( var property in atts ) {
|
||||
array.push(property)
|
||||
}
|
||||
return array;
|
||||
}
|
||||
};
|
||||
@ -0,0 +1,561 @@
|
||||
//<![CDATA[
|
||||
window.onload = function() {
|
||||
"use strict";
|
||||
|
||||
|
||||
// Public variables (User Configuration)
|
||||
var colorProperty,
|
||||
speed = 1000;
|
||||
|
||||
// Private variables
|
||||
var width = window.innerWidth * 0.75,
|
||||
height = window.innerHeight * 4 / 5,
|
||||
focus_opacity = 0.1,
|
||||
radius = 8;
|
||||
|
||||
// Private Graph variables
|
||||
var color, // Color for nodes
|
||||
zoom, // Zoom
|
||||
force, // Set up the force layout
|
||||
svg, // Svg item
|
||||
|
||||
groot, // Append sections to svg to have nodes and edges separately
|
||||
glinks,
|
||||
gnodes,
|
||||
data_node, // Actual node data for the graph
|
||||
data_link, // Actual link data for the graph
|
||||
|
||||
graph, // Graph
|
||||
atts, // Dynamic attributes if it is necessary
|
||||
linkedByIndex, // Nodes linked by index
|
||||
link, // Line svgs
|
||||
node; // Circles for the nodes
|
||||
|
||||
// Private Timeline variables
|
||||
var minInterval, // Min value of the graph
|
||||
maxInterval, // Max value of the graph
|
||||
minUnix, // Min value for the timeline
|
||||
maxUnix, // Max value for the timeline
|
||||
stepUnix, // Step value for the timeline
|
||||
slider, // Slider
|
||||
time, // Variable to calculate date intervals
|
||||
play; // Constant for the interval to play the simulation
|
||||
|
||||
|
||||
|
||||
d3.select('#graph')
|
||||
.attr("width", width)
|
||||
.attr("height", height);
|
||||
|
||||
d3.select('#slider3').attr("width", width).call(d3.slider().axis(true)
|
||||
.min(0).max(100)
|
||||
);
|
||||
|
||||
$('.load').css("left", width / 2 - 25)
|
||||
.css("top", height / 2);
|
||||
$('#configuration').css("height", height)
|
||||
|
||||
loader(false);
|
||||
|
||||
$('#file').change(function() {
|
||||
var index = $('.custom-file-input').val().lastIndexOf("\\") + 1;
|
||||
$('.custom-file-control').attr("data-content",
|
||||
$('.custom-file-input').val().substr(index) || "Choose file...");
|
||||
|
||||
$.ajax({
|
||||
url: 'upload.php', // point to server-side PHP script
|
||||
type: 'POST',
|
||||
data: new FormData($('form')[0]),
|
||||
timeout: 3000,
|
||||
cache: false,
|
||||
contentType: false,
|
||||
processData: false,
|
||||
beforeSend: function() {
|
||||
clearPreviousGraph();
|
||||
}
|
||||
|
||||
}).done(function(response) {
|
||||
// Show loader
|
||||
loader(true);
|
||||
$('.alert-danger').hide();
|
||||
|
||||
// Load File
|
||||
setTimeout(function() {
|
||||
loadFile(response);
|
||||
}, 100);
|
||||
|
||||
}).fail(function(response) {
|
||||
loader(false);
|
||||
$('#error-message').text(response.responseText || "Connection timed out");
|
||||
$('.alert-danger').show();
|
||||
});
|
||||
});
|
||||
|
||||
function clearPreviousGraph() {
|
||||
$('#graph').html('');
|
||||
$('#slider3').html('');
|
||||
$('#properties-dynamic').html('').show();
|
||||
$('#properties-static').html('').show();
|
||||
$('#percentTable > tbody').empty();
|
||||
$('#info-graph > tbody').empty();
|
||||
$('#info-graph > tbody').empty();
|
||||
}
|
||||
|
||||
function loader(show) {
|
||||
$('.load').show();
|
||||
// Show loader
|
||||
if (show) {
|
||||
$('svg#graph').css("background-color", "white");
|
||||
$('.load').text("").addClass("loader");
|
||||
|
||||
// Show "No File"
|
||||
} else {
|
||||
$('svg#graph').css("background-color", "rgba(128,128,128,0.1)");
|
||||
$('.load').text("No file").removeClass("loader");
|
||||
}
|
||||
}
|
||||
|
||||
=====================================================================================================================================================================
|
||||
|
||||
function loadFile(file) {
|
||||
|
||||
/**
|
||||
* GRAPH
|
||||
*/
|
||||
|
||||
// Color
|
||||
color = d3.scale.category20();
|
||||
|
||||
// Zoom
|
||||
zoom = d3.behavior
|
||||
.zoom()
|
||||
.scaleExtent([1/10, 10])
|
||||
.on('zoom', function () {
|
||||
//console.trace("zoom", d3.event.translate, d3.event.scale);
|
||||
groot.attr('transform',
|
||||
'translate(' + d3.event.translate + ')scale(' + d3.event.scale + ')');
|
||||
});
|
||||
|
||||
// Set up the force layout
|
||||
force = d3.layout.force()
|
||||
.charge(-500)
|
||||
.linkDistance(30)
|
||||
.size([width, height]);
|
||||
|
||||
// Activate zoom for the svg item
|
||||
svg = d3.select('#graph')
|
||||
.attr("width", width)
|
||||
.attr("height", height)
|
||||
.call(zoom);
|
||||
|
||||
// Append sections to svg to have nodes and edges separately
|
||||
groot = svg.append("g") .attr("id", "root");
|
||||
glinks = groot.append("g") .attr("id", "links");
|
||||
gnodes = groot.append("g") .attr("id", "nodes");
|
||||
|
||||
|
||||
|
||||
// Read the data from the graph
|
||||
graph = GexfParser.fetch(file);
|
||||
console.log("Graph", graph);
|
||||
|
||||
if (graph.mode === "dynamic") {
|
||||
atts = GexfParser.dynamic(file, graph.timeformat)
|
||||
colorProperty = graph.model[0].title;
|
||||
console.log("Dynamic Attributes", atts);
|
||||
} else {
|
||||
atts = null;
|
||||
}
|
||||
|
||||
// Number of nodes and links info table
|
||||
$('<tr>').appendTo('#info-graph > tbody');
|
||||
$('<th>').text('Nodes:').appendTo('#info-graph > tbody tr:nth-child(1)');
|
||||
$('<th>').text(graph.nodes.length).addClass('text-right').appendTo('#info-graph > tbody tr:nth-child(1)');
|
||||
|
||||
$('<tr>').appendTo('#info-graph > tbody');
|
||||
$('<th>').text('Links:').appendTo('#info-graph > tbody tr:nth-child(2)');
|
||||
$('<th>').text(graph.links.length).addClass('text-right').appendTo('#info-graph > tbody tr:nth-child(2)');
|
||||
|
||||
|
||||
|
||||
// Update linkedByIndex
|
||||
linkedByIndex = {};
|
||||
graph.links.forEach(function(d) {
|
||||
linkedByIndex[d.source + "," + d.target] = true;
|
||||
});
|
||||
|
||||
|
||||
// Creates the graph data structure out of the json data
|
||||
force.nodes(graph.nodes)
|
||||
.links(graph.links)
|
||||
.start();
|
||||
|
||||
// Create all the line svgs but without locations yet
|
||||
link = glinks.selectAll(".link").data(graph.links);
|
||||
set_link(link);
|
||||
|
||||
// Do the same with the circles for the nodes - no
|
||||
var lastFocusNode;
|
||||
node = gnodes.selectAll(".node").data(graph.nodes);
|
||||
set_node(node);
|
||||
|
||||
// Now we are giving the SVGs coordinates - the force layout is generating the coordinates which this code is using to update the attributes
|
||||
// of the SVG elements
|
||||
force.on("tick", function () {
|
||||
|
||||
link.attr("x1", function (d) {
|
||||
return d.source.x;
|
||||
})
|
||||
.attr("y1", function (d) {
|
||||
return d.source.y;
|
||||
})
|
||||
.attr("x2", function (d) {
|
||||
return d.target.x;
|
||||
})
|
||||
.attr("y2", function (d) {
|
||||
return d.target.y;
|
||||
});
|
||||
|
||||
node.attr('transform', function translate(d) {
|
||||
return 'translate(' + d.x + ',' + d.y + ')';
|
||||
});
|
||||
});
|
||||
|
||||
function set_node(node) {
|
||||
// Add nodes if the data has more nodes than before
|
||||
node.enter().append("circle")
|
||||
.attr("class", "node")
|
||||
.attr("r", radius)
|
||||
.style("fill", function (d) {
|
||||
return color(d.attributes[colorProperty]);
|
||||
})
|
||||
// Cancel zoom movement so you can move the node
|
||||
.on("mousedown", function(d) {
|
||||
d3.event.stopPropagation();
|
||||
})
|
||||
// Double-click to focus neighbours
|
||||
.on("dblclick", function(d) {
|
||||
d3.event.stopPropagation();
|
||||
if (d === lastFocusNode) {
|
||||
lastFocusNode = undefined;
|
||||
node.style("opacity", 1);
|
||||
link.style("opacity", 1);
|
||||
} else {
|
||||
lastFocusNode = d;
|
||||
set_focus(d);
|
||||
}
|
||||
}).call(force.drag);
|
||||
|
||||
// Remove nodes if the data has less nodes than before
|
||||
node.exit().remove();
|
||||
}
|
||||
|
||||
function set_link(link) {
|
||||
// Remove links if the data has more links than before
|
||||
link.enter().append("line")
|
||||
.attr("class", "link")
|
||||
.style("stroke-width", function (d) {
|
||||
return Math.sqrt(d.value);
|
||||
});
|
||||
|
||||
// Remove links if the data has less links than before
|
||||
link.exit().remove();
|
||||
}
|
||||
|
||||
function set_focus(d) {
|
||||
|
||||
node.style("opacity", function(o) {
|
||||
return isConnected(d,o) || d.index == o.index ? 1 : focus_opacity;
|
||||
});
|
||||
|
||||
link.style("opacity", function(o) {
|
||||
return o.source.index == d.index || o.target.index == d.index ? 1 : focus_opacity;
|
||||
});
|
||||
|
||||
function isConnected(source, neighbour) {
|
||||
return linkedByIndex[source.index + "," + neighbour.index] ||
|
||||
linkedByIndex[neighbour.index + "," + source.index];
|
||||
}
|
||||
}
|
||||
|
||||
=====================================================================================================================================================================
|
||||
|
||||
/**
|
||||
* TIMELINE
|
||||
*/
|
||||
|
||||
// Maximum and minimum of all the intervals
|
||||
minInterval = Math.min();
|
||||
maxInterval = Math.max();
|
||||
_helpers.attributesInterval(atts, function(d) {
|
||||
if ( d[0] < minInterval && d[0] != -Infinity ) minInterval = d[0];
|
||||
if ( d[1] < minInterval && d[0] != +Infinity ) minInterval = d[1];
|
||||
if ( d[0] > maxInterval && d[0] != -Infinity ) maxInterval = d[0];
|
||||
if ( d[1] > maxInterval && d[1] != +Infinity ) maxInterval = d[1];
|
||||
});
|
||||
|
||||
// Transform dates to ints
|
||||
if ( graph.timeformat === "date" ) {
|
||||
time = d3.scale.linear().domain([minInterval, maxInterval]).range([1, 20]);
|
||||
// Attributes
|
||||
_helpers.attributesInterval(atts, function(d) {
|
||||
if (d[0] !== -Infinity) d[0] = time(d[0]);
|
||||
if (d[1] !== +Infinity) d[1] = time(d[1]);
|
||||
});
|
||||
// Nodes
|
||||
graph.nodes.forEach( function(node) {
|
||||
if (Array.isArray(node.spell)) {
|
||||
node.spell.forEach( function(d) {
|
||||
if (d[0] !== -Infinity) d[0] = time(d[0]);
|
||||
if (d[1] !== +Infinity) d[1] = time(d[1]);
|
||||
});
|
||||
}
|
||||
});
|
||||
// Links
|
||||
graph.links.forEach( function(link) {
|
||||
if (link.spell[0] !== -Infinity) link.spell[0] = time(link.spell[0]);
|
||||
if (link.spell[1] !== +Infinity) link.spell[1] = time(link.spell[1]);
|
||||
});
|
||||
minInterval = 1;
|
||||
maxInterval = 20;
|
||||
}
|
||||
|
||||
|
||||
stepUnix = (maxInterval - minInterval) / 200;
|
||||
minUnix = (minInterval !== Math.min()) ? minInterval - 2 * stepUnix : 0;
|
||||
maxUnix = (maxInterval !== Math.max()) ? maxInterval + 2 * stepUnix : minUnix + 20;
|
||||
|
||||
// Create the slider
|
||||
slider = d3.slider();
|
||||
d3.select("#slider3").attr("width", width).call(slider.axis(true)
|
||||
.min(minUnix).max(maxUnix).step(stepUnix).value(maxUnix)
|
||||
.on("slide", function(evt, value) {
|
||||
updateData(value);
|
||||
})
|
||||
);
|
||||
|
||||
function updateData(value) {
|
||||
|
||||
var statics = {};
|
||||
$('#percentTable > tbody').empty();
|
||||
|
||||
// Reset data
|
||||
var delete_links = true;
|
||||
data_node = [];
|
||||
data_link = graph.links.slice();
|
||||
|
||||
// Nodes
|
||||
graph.nodes.forEach(function(n) {
|
||||
if (Array.isArray(n.spell)) {
|
||||
n.spell.forEach( function(d) {
|
||||
if (d[0] < value && value <= d[1]) {
|
||||
data_node.push(n);
|
||||
delete_links = false;
|
||||
}
|
||||
});
|
||||
if (delete_links) {
|
||||
graph.links.forEach(function(e) {
|
||||
if (e.source === n || e.target === n) {
|
||||
data_link.splice(data_link.indexOf(e), 1);
|
||||
}
|
||||
});
|
||||
}
|
||||
} else {
|
||||
data_node.push(n);
|
||||
}
|
||||
});
|
||||
|
||||
// Links
|
||||
graph.links.forEach(function(e) {
|
||||
if ( !(e.spell[0] < value && value <= e.spell[1]) && data_link.includes(e) )
|
||||
data_link.splice(data_link.indexOf(e), 1);
|
||||
});
|
||||
|
||||
// Reset force
|
||||
force.stop()
|
||||
.nodes(data_node)
|
||||
.links(data_link)
|
||||
.start();
|
||||
|
||||
// Redraw Graph
|
||||
link = glinks.selectAll(".link").data(data_link);
|
||||
set_link(link);
|
||||
|
||||
node = gnodes.selectAll(".node").data(data_node);
|
||||
set_node(node);
|
||||
|
||||
|
||||
// Node Attributes
|
||||
data_node.forEach(function(n) {
|
||||
|
||||
for (var property in atts) {
|
||||
|
||||
var interval = atts[property][n.index].interval
|
||||
|
||||
for ( var i = 0; i < interval.length; i++ ) {
|
||||
//console.log(interval[i][0], value, interval[i][1], "->", interval[i][2])
|
||||
if (interval[i][0] < value && value <= interval[i][1])
|
||||
n.attributes[property] = interval[i][2];
|
||||
else if (value === minUnix)
|
||||
n.attributes[property] = interval[0][2];
|
||||
}
|
||||
}
|
||||
|
||||
// Count node properties
|
||||
statics[n.attributes[colorProperty]] = (!statics[n.attributes[colorProperty]]) ? 1 :
|
||||
statics[n.attributes[colorProperty]] + 1;
|
||||
|
||||
});
|
||||
|
||||
node.style("fill", function (d) {
|
||||
return color(d.attributes[colorProperty]);
|
||||
});
|
||||
|
||||
// Show the five properties with more percentage
|
||||
var staticsSorted = Object.keys(statics).sort(function(a,b) {
|
||||
return statics[b] - statics[a];
|
||||
});
|
||||
|
||||
for ( var i = 0; ( i < staticsSorted.length ) && ( i < 5 ); i++ ) {
|
||||
var percent = statics[staticsSorted[i]] / data_node.length * 100;
|
||||
|
||||
var propertyName = (staticsSorted[i].includes("class")) ?
|
||||
staticsSorted[i].split('.').pop().split('\'')[0] : staticsSorted[i];
|
||||
|
||||
// Draw table every time
|
||||
var appendTo = '#percentTable > tbody tr:nth-child(' + Number(i + 1) + ')';
|
||||
|
||||
$('<tr>').addClass('col-sm-12').appendTo('#percentTable > tbody');
|
||||
$('<td>').css("background-color", color(staticsSorted[i])).addClass('col-sm-1').attr('data-value', staticsSorted[i]).appendTo(appendTo);
|
||||
$('<td>').addClass('text-left col-sm-4').text(percent.toFixed(2) + " %").appendTo(appendTo);
|
||||
$('<td>').addClass('text-right col-sm-6 property-name').text(propertyName).appendTo(appendTo);
|
||||
}
|
||||
|
||||
return;
|
||||
}
|
||||
|
||||
=====================================================================================================================================================================
|
||||
|
||||
/**
|
||||
* PAGE ELEMENTS
|
||||
*/
|
||||
|
||||
$('.load').hide();
|
||||
|
||||
$('button#button_play').on('click', function() {
|
||||
|
||||
$('button#button_play').addClass('pressed').prop("disabled", true);
|
||||
$('#speed-slider').slider('disable');
|
||||
slider.step( 1 / speed );
|
||||
|
||||
if (slider.value() >= maxUnix) {
|
||||
slider.value(minUnix);
|
||||
updateData(slider.value());
|
||||
|
||||
setTimeout(player, 2000);
|
||||
} else {
|
||||
player();
|
||||
}
|
||||
|
||||
var i = slider.value();
|
||||
function player() {
|
||||
clearInterval(play);
|
||||
play = setInterval(function() {
|
||||
|
||||
if (slider.value() + slider.step() >= maxUnix) {
|
||||
slider.value(maxUnix);
|
||||
slider.step(stepUnix);
|
||||
clearInterval(play);
|
||||
$('button#button_play').removeClass('pressed').prop("disabled", false);
|
||||
$('#speed-slider').slider('enable');
|
||||
} else {
|
||||
updateData(slider.value());
|
||||
slider.value(i);
|
||||
i += slider.step();
|
||||
}
|
||||
|
||||
}, 5);
|
||||
}
|
||||
});
|
||||
|
||||
$('button#button_pause').on('click', function() {
|
||||
clearInterval(play);
|
||||
slider.step(stepUnix);
|
||||
$('button#button_play').removeClass('pressed').prop("disabled", false);
|
||||
$('#speed-slider').slider('enable');
|
||||
});
|
||||
|
||||
var dynamicArray = _helpers.dynamicAttsToArray(atts);
|
||||
for (var i = 0; i < graph.model.length; i++) {
|
||||
if ( dynamicArray.includes(graph.model[i].title) )
|
||||
$('<option>').val(graph.model[i].title).text(graph.model[i].title).appendTo('#properties-dynamic');
|
||||
else
|
||||
$('<option>').val(graph.model[i].title).text(graph.model[i].title).appendTo('#properties-static');
|
||||
}
|
||||
|
||||
// Hide optgroups if they are empty
|
||||
if ( $('#properties-static').children().length === 0 ) $('#properties-static').hide();
|
||||
if ( $('#properties-dynamic').children().length === 0 ) $('#properties-dynamic').hide();
|
||||
|
||||
$('select#properties').change(function() {
|
||||
colorProperty = $('select#properties').val();
|
||||
updateData(slider.value());
|
||||
});
|
||||
|
||||
$('button#button_zoomFit').click(function() {
|
||||
|
||||
var paddingPercent = 0.7;
|
||||
var transitionDuration = 750;
|
||||
|
||||
var bounds = groot.node().getBBox();
|
||||
var parent = groot.node().parentElement;
|
||||
var fullWidth = parent.clientWidth,
|
||||
fullHeight = parent.clientHeight;
|
||||
var widthBounds = bounds.width,
|
||||
heightBounds = bounds.height;
|
||||
var midX = bounds.x + widthBounds / 2,
|
||||
midY = bounds.y + heightBounds / 2;
|
||||
if (widthBounds == 0 || heightBounds == 0) return; // nothing to fit
|
||||
var scale = (paddingPercent || 0.75) / Math.max(widthBounds / fullWidth, heightBounds / fullHeight);
|
||||
var translate = [fullWidth / 2 - scale * midX, fullHeight / 2 - scale * midY];
|
||||
|
||||
//console.trace("zoomFit", translate, scale);
|
||||
groot
|
||||
.transition()
|
||||
.duration(transitionDuration || 0) // milliseconds
|
||||
.call(zoom.translate(translate).scale(scale).event);
|
||||
});
|
||||
|
||||
// Speed for the timeline
|
||||
$('#speed-slider').slider('enable').on('change', function(value) {
|
||||
speed = value.value.newValue;
|
||||
});
|
||||
|
||||
// Link distance between the nodes
|
||||
$('#link-distance-slider').slider('enable').on('change', function(value) {
|
||||
force.stop().linkDistance(value.value.newValue).start();
|
||||
|
||||
// Update radius of the nodes to see them better
|
||||
var r = d3.scale.linear().domain([30, 1000]).range([8, 24]);
|
||||
radius = r(value.value.newValue);
|
||||
node.attr('r', radius);
|
||||
});
|
||||
|
||||
|
||||
updateData(slider.value());
|
||||
|
||||
// Clear all events
|
||||
$('#file').change(function() {
|
||||
$('button#button_play').off();
|
||||
$('button#button_pause').off();
|
||||
$('select#properties').off();
|
||||
$('button#button_zoomFit').off();
|
||||
$('#speed-slider').slider('disable');
|
||||
$('#link-distance-slider').slider('disable').slider('setValue', 30);
|
||||
});
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
///]]
|
||||
@ -0,0 +1,622 @@
|
||||
|
||||
;(function(undefined) {
|
||||
'use strict';
|
||||
|
||||
/**
|
||||
* GEXF Parser
|
||||
* ============
|
||||
*
|
||||
* Author: PLIQUE Guillaume (Yomguithereal)
|
||||
* URL: https://github.com/Yomguithereal/gexf-parser
|
||||
* Version: 1.0
|
||||
*/
|
||||
|
||||
/**
|
||||
* Helper Namespace
|
||||
* -----------------
|
||||
*
|
||||
* A useful batch of function dealing with DOM operations and types.
|
||||
*/
|
||||
var _helpers = {
|
||||
nodeListToArray: function(nodeList) {
|
||||
|
||||
// Return array
|
||||
var children = [];
|
||||
|
||||
// Iterating
|
||||
for (var i = 0, len = nodeList.length; i < len; ++i) {
|
||||
if (nodeList[i].nodeName !== '#text')
|
||||
children.push(nodeList[i]);
|
||||
}
|
||||
|
||||
return children;
|
||||
},
|
||||
nodeListEach: function(nodeList, func) {
|
||||
|
||||
// Iterating
|
||||
for (var i = 0, len = nodeList.length; i < len; ++i) {
|
||||
if (nodeList[i].nodeName !== '#text')
|
||||
func(nodeList[i]);
|
||||
}
|
||||
},
|
||||
nodeListToHash: function(nodeList, filter) {
|
||||
|
||||
// Return object
|
||||
var children = {};
|
||||
|
||||
// Iterating
|
||||
for (var i = 0; i < nodeList.length; i++) {
|
||||
if (nodeList[i].nodeName !== '#text') {
|
||||
var prop = filter(nodeList[i]);
|
||||
children[prop.key] = prop.value;
|
||||
}
|
||||
}
|
||||
|
||||
return children;
|
||||
},
|
||||
namedNodeMapToObject: function(nodeMap) {
|
||||
|
||||
// Return object
|
||||
var attributes = {};
|
||||
|
||||
// Iterating
|
||||
for (var i = 0; i < nodeMap.length; i++) {
|
||||
attributes[nodeMap[i].name] = nodeMap[i].value;
|
||||
}
|
||||
|
||||
return attributes;
|
||||
},
|
||||
getFirstElementByTagNS: function(node, ns, tag) {
|
||||
var el = node.getElementsByTagName(ns + ':' + tag)[0];
|
||||
|
||||
if (!el)
|
||||
el = node.getElementsByTagNameNS(ns, tag)[0];
|
||||
|
||||
if (!el)
|
||||
el = node.getElementsByTagName(tag)[0];
|
||||
|
||||
return el;
|
||||
},
|
||||
getAttributeNS: function(node, ns, attribute) {
|
||||
var attr_value = node.getAttribute(ns + ':' + attribute);
|
||||
|
||||
if (attr_value === undefined)
|
||||
attr_value = node.getAttributeNS(ns, attribute);
|
||||
|
||||
if (attr_value === undefined)
|
||||
attr_value = node.getAttribute(attribute);
|
||||
|
||||
return attr_value;
|
||||
},
|
||||
enforceType: function(type, value) {
|
||||
|
||||
switch (type) {
|
||||
case 'boolean':
|
||||
value = (value === 'true');
|
||||
break;
|
||||
|
||||
case 'integer':
|
||||
case 'long':
|
||||
case 'float':
|
||||
case 'double':
|
||||
value = +value;
|
||||
break;
|
||||
}
|
||||
|
||||
return value;
|
||||
},
|
||||
getRGB: function(values) {
|
||||
return (values[3]) ?
|
||||
'rgba(' + values.join(',') + ')' :
|
||||
'rgb(' + values.slice(0, -1).join(',') + ')';
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
/**
|
||||
* Parser Core Functions
|
||||
* ----------------------
|
||||
*
|
||||
* The XML parser's functions themselves.
|
||||
*/
|
||||
|
||||
/**
|
||||
* Node structure.
|
||||
* A function returning an object guarded with default value.
|
||||
*
|
||||
* @param {object} properties The node properties.
|
||||
* @return {object} The guarded node object.
|
||||
*/
|
||||
function Node(properties) {
|
||||
|
||||
// Possible Properties
|
||||
return {
|
||||
id: properties.id,
|
||||
index: properties.index,
|
||||
label: properties.label,
|
||||
attributes: properties.attributes || {},
|
||||
viz: properties.viz || {},
|
||||
spell: properties.spell || {}
|
||||
};
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Edge structure.
|
||||
* A function returning an object guarded with default value.
|
||||
*
|
||||
* @param {object} properties The edge properties.
|
||||
* @return {object} The guarded edge object.
|
||||
*/
|
||||
function Edge(properties, nodeList) {
|
||||
|
||||
var list = _helpers.nodeListToArray(nodeList);
|
||||
|
||||
function findNodeSource (node) {
|
||||
return node.id === properties.source;
|
||||
}
|
||||
|
||||
function findNodeTarget (node) {
|
||||
return node.id === properties.target;
|
||||
}
|
||||
|
||||
// Possible Properties
|
||||
return {
|
||||
id: properties.id,
|
||||
type: properties.type || 'undirected',
|
||||
label: properties.label || '',
|
||||
source: list.indexOf(list.find(findNodeSource)),
|
||||
target: list.indexOf(list.find(findNodeTarget)),
|
||||
value: +properties.value || 1.0,
|
||||
viz: properties.viz || {},
|
||||
spell: properties.spell || {}
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
* Graph parser.
|
||||
* This structure parse a gexf string and return an object containing the
|
||||
* parsed graph.
|
||||
*
|
||||
* @param {string} xml The xml string of the gexf file to parse.
|
||||
* @return {object} The parsed graph.
|
||||
*/
|
||||
function Graph(xml) {
|
||||
var _xml = {};
|
||||
|
||||
// Basic Properties
|
||||
//------------------
|
||||
_xml.els = {
|
||||
root: xml.getElementsByTagName('gexf')[0],
|
||||
graph: xml.getElementsByTagName('graph')[0],
|
||||
meta: xml.getElementsByTagName('meta')[0],
|
||||
model: xml.getElementsByTagName('attribute'),
|
||||
nodes: xml.getElementsByTagName('node'),
|
||||
links: xml.getElementsByTagName('edge')
|
||||
};
|
||||
|
||||
_xml.hasViz = !!_helpers.getAttributeNS(_xml.els.root, 'xmlns', 'viz');
|
||||
_xml.version = _xml.els.root.getAttribute('version') || '1.0';
|
||||
_xml.mode = _xml.els.graph.getAttribute('mode') || 'static';
|
||||
_xml.timeformat = _xml.els.graph.getAttribute('timeformat') || null;
|
||||
|
||||
var edgeType = _xml.els.graph.getAttribute('defaultedgetype');
|
||||
_xml.defaultEdgetype = edgeType || 'undirected';
|
||||
|
||||
|
||||
// Parser Functions
|
||||
//------------------
|
||||
|
||||
// Meta Data
|
||||
function _metaData() {
|
||||
|
||||
var metas = {};
|
||||
if (!_xml.els.meta)
|
||||
return metas;
|
||||
|
||||
// Last modified date
|
||||
metas.lastmodifieddate = _xml.els.meta.getAttribute('lastmodifieddate');
|
||||
|
||||
// Other information
|
||||
_helpers.nodeListEach(_xml.els.meta.childNodes, function(child) {
|
||||
metas[child.tagName.toLowerCase()] = child.textContent;
|
||||
});
|
||||
|
||||
return metas;
|
||||
}
|
||||
|
||||
// Model
|
||||
function _model() {
|
||||
var attributes = [];
|
||||
|
||||
// Iterating through attributes
|
||||
_helpers.nodeListEach(_xml.els.model, function(attr) {
|
||||
|
||||
// Properties
|
||||
var properties = {
|
||||
id: attr.getAttribute('id') || attr.getAttribute('for'),
|
||||
type: attr.getAttribute('type') || 'string',
|
||||
title: attr.getAttribute('title') || ''
|
||||
};
|
||||
|
||||
// Defaults
|
||||
var default_el = _helpers.nodeListToArray(attr.childNodes);
|
||||
|
||||
if (default_el.length > 0)
|
||||
properties.defaultValue = default_el[0].textContent;
|
||||
|
||||
// Creating attribute
|
||||
attributes.push(properties);
|
||||
});
|
||||
|
||||
return attributes;
|
||||
}
|
||||
|
||||
// Nodes
|
||||
function _nodes(model) {
|
||||
var nodes = [];
|
||||
|
||||
// Iteration through nodes
|
||||
_helpers.nodeListEach(_xml.els.nodes, function(n) {
|
||||
|
||||
// Basic properties
|
||||
var properties = {
|
||||
id: n.getAttribute('id'),
|
||||
label: n.getAttribute('label') || ''
|
||||
};
|
||||
|
||||
// Retrieving data from nodes if any
|
||||
if (model.length > 0)
|
||||
properties.attributes = _nodeData(model, n);
|
||||
|
||||
// Retrieving viz information
|
||||
if (_xml.hasViz)
|
||||
properties.viz = _nodeViz(n);
|
||||
|
||||
properties.spell = _nodeSpell(n);
|
||||
|
||||
// Pushing node
|
||||
nodes.push(Node(properties));
|
||||
});
|
||||
|
||||
return nodes;
|
||||
}
|
||||
|
||||
// Spells from nodes
|
||||
function _nodeSpell(node) {
|
||||
var spells = node.getElementsByTagName('spells')[0];
|
||||
|
||||
if (spells) {
|
||||
var spell = spells.getElementsByTagName('spell');
|
||||
var interval = [];
|
||||
|
||||
for ( var i = 0; i < spell.length; i++ ) {
|
||||
var start = ( (_xml.timeformat !== "date") ? parseFloat(spell[i].getAttribute("start")) || -Infinity :
|
||||
(spell[i].getAttribute('start') ? new Date(spell[i].getAttribute('start')) : -Infinity) );
|
||||
|
||||
var end = ( (_xml.timeformat !== "date") ? parseFloat(spell[i].getAttribute("end")) || Infinity :
|
||||
(spell[i].getAttribute('end') ? new Date(spell[i].getAttribute('end')) : Infinity) );
|
||||
|
||||
interval.push([start, end]);
|
||||
}
|
||||
|
||||
return interval;
|
||||
|
||||
} else {
|
||||
return;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
// Data from nodes
|
||||
function _nodeData(model, node) {
|
||||
|
||||
var data = {};
|
||||
var attvalues_els = node.getElementsByTagName('attvalue');
|
||||
|
||||
// Getting Node Indicated Attributes
|
||||
var ah = _helpers.nodeListToHash(attvalues_els, function(el) {
|
||||
var attributes = _helpers.namedNodeMapToObject(el.attributes);
|
||||
var key = attributes.id || attributes['for'];
|
||||
|
||||
// Returning object
|
||||
return { key: key, value: attributes.value };
|
||||
|
||||
});
|
||||
|
||||
|
||||
// Iterating through model
|
||||
model.map(function(a) {
|
||||
// Default value?
|
||||
var att_title = a.title.toLowerCase();
|
||||
data[att_title] = !(a.id in ah) && 'defaultValue' in a ?
|
||||
_helpers.enforceType(a.type, a.defaultValue) :
|
||||
_helpers.enforceType(a.type, ah[a.id]);
|
||||
});
|
||||
|
||||
return data;
|
||||
}
|
||||
|
||||
// Viz information from nodes
|
||||
function _nodeViz(node) {
|
||||
var viz = {};
|
||||
|
||||
// Color
|
||||
var color_el = _helpers.getFirstElementByTagNS(node, 'viz', 'color');
|
||||
|
||||
if (color_el) {
|
||||
var color = ['r', 'g', 'b', 'a'].map(function(c) {
|
||||
return color_el.getAttribute(c);
|
||||
});
|
||||
|
||||
viz.color = _helpers.getRGB(color);
|
||||
}
|
||||
|
||||
// Position
|
||||
var pos_el = _helpers.getFirstElementByTagNS(node, 'viz', 'position');
|
||||
|
||||
if (pos_el) {
|
||||
viz.position = {};
|
||||
|
||||
['x', 'y', 'z'].map(function(p) {
|
||||
viz.position[p] = +pos_el.getAttribute(p);
|
||||
});
|
||||
}
|
||||
|
||||
// Size
|
||||
var size_el = _helpers.getFirstElementByTagNS(node, 'viz', 'size');
|
||||
if (size_el)
|
||||
viz.size = +size_el.getAttribute('value');
|
||||
|
||||
// Shape
|
||||
var shape_el = _helpers.getFirstElementByTagNS(node, 'viz', 'shape');
|
||||
if (shape_el)
|
||||
viz.shape = shape_el.getAttribute('value');
|
||||
|
||||
return viz;
|
||||
}
|
||||
|
||||
// Edges
|
||||
function _edges(default_type) {
|
||||
var edges = [];
|
||||
|
||||
// Iteration through edges
|
||||
_helpers.nodeListEach(_xml.els.links, function(e) {
|
||||
|
||||
// Creating the edge
|
||||
var properties = _helpers.namedNodeMapToObject(e.attributes);
|
||||
if (!('type' in properties)) {
|
||||
properties.type = default_type;
|
||||
}
|
||||
|
||||
// Retrieving viz information
|
||||
if (_xml.hasViz)
|
||||
properties.viz = _edgeViz(e);
|
||||
|
||||
properties.spell = _edgeSpell(e);
|
||||
|
||||
edges.push(Edge(properties, _xml.els.nodes));
|
||||
});
|
||||
|
||||
return edges;
|
||||
}
|
||||
|
||||
// Spells from edges
|
||||
function _edgeSpell(edge) {
|
||||
var start = ( (_xml.timeformat !== "date") ? parseFloat(edge.getAttribute("start")) || -Infinity :
|
||||
(edge.getAttribute('start') ? new Date(edge.getAttribute('start')) : -Infinity) );
|
||||
|
||||
var end = ( (_xml.timeformat !== "date") ? parseFloat(edge.getAttribute("end")) || Infinity :
|
||||
(edge.getAttribute('end') ? new Date(edge.getAttribute('end')) : Infinity) );
|
||||
|
||||
return [start, end];
|
||||
}
|
||||
|
||||
// Viz information from edges
|
||||
function _edgeViz(edge) {
|
||||
var viz = {};
|
||||
|
||||
// Color
|
||||
var color_el = _helpers.getFirstElementByTagNS(edge, 'viz', 'color');
|
||||
|
||||
if (color_el) {
|
||||
var color = ['r', 'g', 'b', 'a'].map(function(c) {
|
||||
return color_el.getAttribute(c);
|
||||
});
|
||||
|
||||
viz.color = _helpers.getRGB(color);
|
||||
}
|
||||
|
||||
// Shape
|
||||
var shape_el = _helpers.getFirstElementByTagNS(edge, 'viz', 'shape');
|
||||
if (shape_el)
|
||||
viz.shape = shape_el.getAttribute('value');
|
||||
|
||||
// Thickness
|
||||
var thick_el = _helpers.getFirstElementByTagNS(edge, 'viz', 'thickness');
|
||||
if (thick_el)
|
||||
viz.thickness = +thick_el.getAttribute('value');
|
||||
|
||||
return viz;
|
||||
}
|
||||
|
||||
|
||||
// Returning the Graph
|
||||
//---------------------
|
||||
_xml.model = _model();
|
||||
|
||||
return {
|
||||
version: _xml.version,
|
||||
mode: _xml.mode,
|
||||
timeformat: _xml.timeformat,
|
||||
defaultEdgeType: _xml.defaultEdgetype,
|
||||
meta: _metaData(),
|
||||
model: _xml.model,
|
||||
nodes: _nodes(_xml.model),
|
||||
links: _edges(_xml.defaultEdgetype)
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
* Dynamics attributes parser.
|
||||
* This structure parse a gexf string and return an object containing the
|
||||
* dynamics attributes.
|
||||
*
|
||||
* @param {string} xml The xml string of the gexf file to parse.
|
||||
* @return {object} The dynamics attributes and its values.
|
||||
*/
|
||||
function dynamicAttributes(xml, timeformat) {
|
||||
|
||||
var _xml = {};
|
||||
|
||||
_xml.els = {
|
||||
nodes: xml.getElementsByTagName('node'),
|
||||
attributes: xml.getElementsByTagName('attributes')
|
||||
}
|
||||
|
||||
for ( var i = 0; i < _xml.els.attributes.length; i++ ) {
|
||||
if (_xml.els.attributes[i].getAttribute("mode") === "dynamic")
|
||||
_xml.els.attributes = _xml.els.attributes[i];
|
||||
}
|
||||
|
||||
var x = {};
|
||||
for ( var i = 0; i < _xml.els.attributes.children.length; i++ ) {
|
||||
var att = x[_xml.els.attributes.children[i].getAttribute("title")] = [];
|
||||
|
||||
var node = 0;
|
||||
_helpers.nodeListEach(_xml.els.nodes, function(n) {
|
||||
att[node] = { interval: [], index: node }
|
||||
|
||||
for ( var j = 0; j < n.getElementsByTagName('attvalue').length; j++ ) {
|
||||
if (n.getElementsByTagName('attvalue')[j].getAttribute("for") === _xml.els.attributes.children[i].getAttribute("id")) {
|
||||
|
||||
var element = n.getElementsByTagName('attvalue')[j];
|
||||
|
||||
var start = ( (timeformat !== "date") ? parseFloat(element.getAttribute("start")) || -Infinity :
|
||||
(element.getAttribute('start') ? new Date(element.getAttribute('start')) : -Infinity) );
|
||||
|
||||
var end = ( (timeformat !== "date") ? parseFloat(element.getAttribute("end")) || Infinity :
|
||||
(element.getAttribute('end') ? new Date(element.getAttribute('end')) : Infinity) );
|
||||
|
||||
var value = element.getAttribute("value");
|
||||
|
||||
att[node].interval.push([start, end, value]);
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
node++;
|
||||
});
|
||||
|
||||
}
|
||||
|
||||
return x;
|
||||
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Public API
|
||||
* -----------
|
||||
*
|
||||
* User-accessible functions.
|
||||
*/
|
||||
|
||||
// Fetching GEXF with XHR
|
||||
function fetch(gexf_url, callback) {
|
||||
var xhr = (function() {
|
||||
if (window.XMLHttpRequest)
|
||||
return new XMLHttpRequest();
|
||||
|
||||
var names,
|
||||
i;
|
||||
|
||||
if (window.ActiveXObject) {
|
||||
names = [
|
||||
'Msxml2.XMLHTTP.6.0',
|
||||
'Msxml2.XMLHTTP.3.0',
|
||||
'Msxml2.XMLHTTP',
|
||||
'Microsoft.XMLHTTP'
|
||||
];
|
||||
|
||||
for (i in names)
|
||||
try {
|
||||
return new ActiveXObject(names[i]);
|
||||
} catch (e) {}
|
||||
}
|
||||
|
||||
return null;
|
||||
})();
|
||||
|
||||
if (!xhr)
|
||||
throw 'XMLHttpRequest not supported, cannot load the file.';
|
||||
|
||||
// Async?
|
||||
var async = (typeof callback === 'function'),
|
||||
getResult;
|
||||
|
||||
// If we can't override MIME type, we are on IE 9
|
||||
// We'll be parsing the response string then.
|
||||
if (xhr.overrideMimeType) {
|
||||
xhr.overrideMimeType('text/xml');
|
||||
getResult = function(r) {
|
||||
return r.responseXML;
|
||||
};
|
||||
}
|
||||
else {
|
||||
getResult = function(r) {
|
||||
var p = new DOMParser();
|
||||
return p.parseFromString(r.responseText, 'application/xml');
|
||||
};
|
||||
}
|
||||
|
||||
xhr.open('GET', gexf_url, async);
|
||||
|
||||
if (async)
|
||||
xhr.onreadystatechange = function() {
|
||||
if (xhr.readyState === 4)
|
||||
callback(getResult(xhr));
|
||||
};
|
||||
|
||||
xhr.send();
|
||||
|
||||
return (async) ? xhr : getResult(xhr);
|
||||
}
|
||||
|
||||
// Parsing the GEXF File
|
||||
function parse(gexf) {
|
||||
return Graph(gexf);
|
||||
}
|
||||
|
||||
// Fetch and parse the GEXF File
|
||||
function fetchAndParse(gexf_url, callback) {
|
||||
if (typeof callback === 'function') {
|
||||
return fetch(gexf_url, function(gexf) {
|
||||
callback(Graph(gexf));
|
||||
});
|
||||
} else
|
||||
return Graph(fetch(gexf_url));
|
||||
}
|
||||
|
||||
|
||||
function parseDynamicAttributes(gexf, timeformat) {
|
||||
return dynamicAttributes(fetch(gexf), timeformat);
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Exporting
|
||||
* ----------
|
||||
*/
|
||||
this.GexfParser = {
|
||||
|
||||
// Functions
|
||||
parse: parse,
|
||||
fetch: fetchAndParse,
|
||||
dynamic: parseDynamicAttributes,
|
||||
|
||||
// Version
|
||||
version: '0.1'
|
||||
};
|
||||
|
||||
}).call(this);
|
||||
@ -0,0 +1,67 @@
|
||||
import os
|
||||
import networkx as nx
|
||||
from server import VisualizationElement
|
||||
from soil.simulation import SoilSimulation
|
||||
from xml.etree import ElementTree
|
||||
|
||||
|
||||
class Model():
|
||||
|
||||
def __init__(self, dump=True, dir_path='output'):
|
||||
self.dump = dump
|
||||
self.dir_path = dir_path
|
||||
|
||||
def run(self, config):
|
||||
name = config['name']
|
||||
print('Using config(s): {name}'.format(name=name))
|
||||
|
||||
sim = SoilSimulation(**config)
|
||||
sim.dir_path = os.path.join(self.dir_path, name)
|
||||
sim.dump = self.dump
|
||||
|
||||
print('Dumping results to {} : {}'.format(sim.dir_path, sim.dump))
|
||||
|
||||
sim.run_simulation()
|
||||
|
||||
def get_trial(self, name, trial):
|
||||
graph = nx.read_gexf(os.path.join(self.dir_path, name, '{}_trial_{}.gexf'.format(name, trial)))
|
||||
|
||||
attributes = self.get_attributes(os.path.join(self.dir_path, name, '{}_trial_{}.gexf'.format(name, trial)))
|
||||
json = {}
|
||||
json['graph'] = nx.node_link_data(graph)
|
||||
json['models'] = attributes
|
||||
return json
|
||||
|
||||
def reset(self):
|
||||
pass
|
||||
|
||||
def get_attributes(self, path_gexf):
|
||||
attributes = {}
|
||||
tree = ElementTree.parse(path_gexf)
|
||||
root = tree.getroot()
|
||||
|
||||
ns = { 'gexf': 'http://www.gexf.net/1.2draft' }
|
||||
|
||||
for mode in root[0].findall('gexf:attributes', ns):
|
||||
attributes[mode.attrib['mode']] = []
|
||||
for attribute in mode:
|
||||
values = {
|
||||
'id' : attribute.attrib['id'],
|
||||
'title' : attribute.attrib['title'],
|
||||
'type' : attribute.attrib['type']
|
||||
}
|
||||
attributes[mode.attrib['mode']].append(values)
|
||||
|
||||
return attributes
|
||||
|
||||
|
||||
class GraphVisualization(VisualizationElement):
|
||||
package_includes = []
|
||||
|
||||
# TODO: esta por definir todos los ajustes de simulacion
|
||||
def __init__(self, params=None):
|
||||
new_element = ("new funcion()")
|
||||
self.js_code = "elements.push(" + new_element + ");"
|
||||
|
||||
def render(self, model):
|
||||
pass
|
||||
Loading…
Reference in New Issue