* Improve extra requirement handling
* New mechanism to handle parameters beforehand in chained
calls, and the ability to get help on available parameters in chained
calls (through `?help`).
* Redefined Analysis, to reflect the new ontology
* Add parameters as an entity in the schema
* Update examples to include analyses and parameters
* Add processing plugins, with an interface similar to analysis plugins
* Update tests
* Avoid duplication in split plugin
Closes#51
Squashed commit of the following:
commit d145a852e7
commit 6a1069780b
commit ca69bddc17
commit aa35e62a27
* Add Topic model
* Add PDB post-mortem debugging
* Add logger to plugins (`self.log`)
* Add NLTK resource auto-download
* Force installation of requirements even if adding doesn't work
* Add a method to find files in several possible locations. Now the plugin.open
method will try these locations IF the file is to be opened in read mode.
Otherwise only the SENPY_DATA folder will be used (to avoid writing to the
package folder).
* Refactored BaseModel for efficiency
* Added plugin metaclass to keep track of plugin types
* Moved plugins to examples dir (in a previous commit)
* Simplified validation in parse_params
* Added convenience methods to mock requests in tests
* Changed help schema to use `.valid_parameters` instead of `.parameters`,
which was used in results to show parameters provided by the user.
* Improved UI
* Added basic parameters
* Fixed bugs in parameter handling
* Refactored and cleaned code
It turns out setting "plugins" as a @list in the context causes the
"plugins" property to expand to its full name.
Removing the type causes a regression of #17, which I initially missed
because the test in #17 was wrong.
Closes#26
* Added interactive debugging
* Better exception logging
* More tests for errors
* Added ONBUILD to dockerfile
Now creating new images based on senpy's is as easy as:
```from senpy:<version>```. This will automatically mount the code to
/senpy-plugins and install all dependencies
* Added /data as a VOLUME
* Added `--use-wheel` to pip install both on the image and in the
auto-install function.
* Closes#9
Break compatibilitity:
* Removed ability to (de)activate plugins through the web
Bug-fixes and improvements:
* Closes#5
* Closes#1
* Adds Client (beta)
* Added several schemas
* Lighter string representation -> should avoid delays in the analysis
with plugins that have 'heavy' attributes
Backwards-incompatible changes:
* Context in headers by default
* All schemas include a "@type" argument that is used for autodetection
in the client
... And possibly many more, this is still <1.0
J. Fernando Sánchez
NahcoCP
drevicko