* Improve extra requirement handling
* New mechanism to handle parameters beforehand in chained
calls, and the ability to get help on available parameters in chained
calls (through `?help`).
* Redefined Analysis, to reflect the new ontology
* Add parameters as an entity in the schema
* Update examples to include analyses and parameters
* Add processing plugins, with an interface similar to analysis plugins
* Update tests
* Avoid duplication in split plugin
Closes#51
Squashed commit of the following:
commit d145a852e7857784ba92efc556bb9e513ad5374b
commit 6a1069780b4a5cf26659134bcbea7a5fcec00ad7
commit ca69bddc17122e08142e93180d687d9b91cb4f1f
commit aa35e62a2724f9a3c33765d88de01fe8e44ba5f8
* Fixed Options for extra_params in UI
* Enhanced meta-programming for models
* Plugins can be imported from a python file if they're named
`senpy_<whatever>.py>` (no need for `.senpy` anymore!)
* Add docstings and tests to most plugins
* Read plugin description from the docstring
* Refactor code to get rid of unnecessary `.senpy`s
* Load models, plugins and utils into the main namespace (see __init__.py)
* Enhanced plugin development/experience with utils (easy_test, easy_serve)
* Fix bug in check_template that wouldn't check objects
* Make model defaults a private variable
* Add option to list loaded plugins in CLI
* Update docs
* Refactored BaseModel for efficiency
* Added plugin metaclass to keep track of plugin types
* Moved plugins to examples dir (in a previous commit)
* Simplified validation in parse_params
* Added convenience methods to mock requests in tests
* Changed help schema to use `.valid_parameters` instead of `.parameters`,
which was used in results to show parameters provided by the user.
* Improved UI
* Added basic parameters
* Fixed bugs in parameter handling
* Refactored and cleaned code
We've changed the way plugins are activated, and removed the notion of
deactivated plugins.
Now plugins activate asynchronously.
When calling a plugin, it will be activated if it wasn't, and the call will wait
for the plugin to be fully activated.
* Improved debugging (back to using Flask's built-in mechanisms)
* Recursive model loading from json
* Added DEVPORT to Makefile
* Accept json-ld input. Closes#16
* Improved Exception handling in client
* Modified default plugin selection to only include analysis plugins
* More tests
Closes#12
* Shows only analysis plugins by default on /api/plugins
* Adds a plugin_type parameter to get other types of plugins
* default_plugin chosen from analysis plugins
